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MRPL13 (mitochondrial ribosomal protein L13)

Identity

Alias_symbol (synonym)L13
RPL13
L13mt
RPML13
L13A
Other alias
HGNC (Hugo) MRPL13
LocusID (NCBI) 28998
Atlas_Id 70435
Location 8q24.12  [Link to chromosome band 8q24]
Location_base_pair Starts at 120395844 and ends at 120445407 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL13   14278
Cards
Entrez_Gene (NCBI)MRPL13  28998  mitochondrial ribosomal protein L13
AliasesL13; L13A; L13mt; RPL13; 
RPML13
GeneCards (Weizmann)MRPL13
Ensembl hg19 (Hinxton)ENSG00000172172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172172 [Gene_View]  chr8:120395844-120445407 [Contig_View]  MRPL13 [Vega]
ICGC DataPortalENSG00000172172
TCGA cBioPortalMRPL13
AceView (NCBI)MRPL13
Genatlas (Paris)MRPL13
WikiGenes28998
SOURCE (Princeton)MRPL13
Genetics Home Reference (NIH)MRPL13
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL13  -     chr8:120395844-120445407 -  8q24.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL13  -     8q24.12   [Description]    (hg19-Feb_2009)
EnsemblMRPL13 - 8q24.12 [CytoView hg19]  MRPL13 - 8q24.12 [CytoView hg38]
Mapping of homologs : NCBIMRPL13 [Mapview hg19]  MRPL13 [Mapview hg38]
OMIM610200   
Gene and transcription
Genbank (Entrez)AB049640 AF112214 AK123239 AK307322 AK311924
RefSeq transcript (Entrez)NM_014078
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL13
Cluster EST : UnigeneHs.333823 [ NCBI ]
CGAP (NCI)Hs.333823
Alternative Splicing GalleryENSG00000172172
Gene ExpressionMRPL13 [ NCBI-GEO ]   MRPL13 [ EBI - ARRAY_EXPRESS ]   MRPL13 [ SEEK ]   MRPL13 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28998
GTEX Portal (Tissue expression)MRPL13
Human Protein AtlasENSG00000172172-MRPL13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYD1
Splice isoforms : SwissVarQ9BYD1
PhosPhoSitePlusQ9BYD1
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L13 (PS00783)   
Domains : Interpro (EBI)Ribosomal_L13    Ribosomal_L13_bac-type    Ribosomal_L13_CS   
Domain families : Pfam (Sanger)Ribosomal_L13 (PF00572)   
Domain families : Pfam (NCBI)pfam00572   
Conserved Domain (NCBI)MRPL13
DMDM Disease mutations28998
Blocks (Seattle)MRPL13
PDB (SRS)3J7Y    3J9M   
PDB (PDBSum)3J7Y    3J9M   
PDB (IMB)3J7Y    3J9M   
PDB (RSDB)3J7Y    3J9M   
Structural Biology KnowledgeBase3J7Y    3J9M   
SCOP (Structural Classification of Proteins)3J7Y    3J9M   
CATH (Classification of proteins structures)3J7Y    3J9M   
SuperfamilyQ9BYD1
Human Protein Atlas [tissue]ENSG00000172172-MRPL13 [tissue]
Peptide AtlasQ9BYD1
HPRD14740
IPIIPI00022403   IPI00978497   IPI00793491   IPI01011492   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYD1
IntAct (EBI)Q9BYD1
FunCoupENSG00000172172
BioGRIDMRPL13
STRING (EMBL)MRPL13
ZODIACMRPL13
Ontologies - Pathways
QuickGOQ9BYD1
Ontology : AmiGORNA binding  mRNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  translation  translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  mRNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  translation  translation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL13
Atlas of Cancer Signalling NetworkMRPL13
Wikipedia pathwaysMRPL13
Orthology - Evolution
OrthoDB28998
GeneTree (enSembl)ENSG00000172172
Phylogenetic Trees/Animal Genes : TreeFamMRPL13
HOVERGENQ9BYD1
HOGENOMQ9BYD1
Homologs : HomoloGeneMRPL13
Homology/Alignments : Family Browser (UCSC)MRPL13
Gene fusions - Rearrangements
Tumor Fusion PortalMRPL13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL13
dbVarMRPL13
ClinVarMRPL13
1000_GenomesMRPL13 
Exome Variant ServerMRPL13
ExAC (Exome Aggregation Consortium)ENSG00000172172
GNOMAD BrowserENSG00000172172
Genetic variants : HAPMAP28998
Genomic Variants (DGV)MRPL13 [DGVbeta]
DECIPHERMRPL13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL13 
Mutations
ICGC Data PortalMRPL13 
TCGA Data PortalMRPL13 
Broad Tumor PortalMRPL13
OASIS PortalMRPL13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL13
DgiDB (Drug Gene Interaction Database)MRPL13
DoCM (Curated mutations)MRPL13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL13 (select a term)
intoGenMRPL13
Cancer3DMRPL13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610200   
Orphanet
DisGeNETMRPL13
MedgenMRPL13
Genetic Testing Registry MRPL13
NextProtQ9BYD1 [Medical]
TSGene28998
GENETestsMRPL13
Target ValidationMRPL13
Huge Navigator MRPL13 [HugePedia]
snp3D : Map Gene to Disease28998
BioCentury BCIQMRPL13
ClinGenMRPL13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28998
Chemical/Pharm GKB GenePA30942
Clinical trialMRPL13
Miscellaneous
canSAR (ICR)MRPL13 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL13
EVEXMRPL13
GoPubMedMRPL13
iHOPMRPL13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:18:44 CET 2017

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