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MRPL15 (mitochondrial ribosomal protein L15)

Identity

Alias_symbol (synonym)RPML7
MRP-L7
HSPC145
L15mt
MRP-L15
Other alias
HGNC (Hugo) MRPL15
LocusID (NCBI) 29088
Atlas_Id 70437
Location 8q11.23  [Link to chromosome band 8q11]
Location_base_pair Starts at 54135221 and ends at 54148514 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPL15 (8q11.23) / FAM72A (1q32.1)MRPL15 (8q11.23) / MRPS22 (3q23)SRRM2 (16p13.3) / MRPL15 (8q11.23)
YIPF1 (1p32.3) / MRPL15 (8q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL15   14054
Cards
Entrez_Gene (NCBI)MRPL15  29088  mitochondrial ribosomal protein L15
AliasesHSPC145; L15mt; MRP-L15; MRP-L7; 
RPML7
GeneCards (Weizmann)MRPL15
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:54135221-54148514 [Contig_View]  MRPL15 [Vega]
TCGA cBioPortalMRPL15
AceView (NCBI)MRPL15
Genatlas (Paris)MRPL15
WikiGenes29088
SOURCE (Princeton)MRPL15
Genetics Home Reference (NIH)MRPL15
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL15  -     chr8:54135221-54148514 +  8q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL15  -     8q11.23   [Description]    (hg19-Feb_2009)
EnsemblMRPL15 - 8q11.23 [CytoView hg19]  MRPL15 - 8q11.23 [CytoView hg38]
Mapping of homologs : NCBIMRPL15 [Mapview hg19]  MRPL15 [Mapview hg38]
OMIM611828   
Gene and transcription
Genbank (Entrez)AF161494 AK312832 AL136665 AM392964 BC000891
RefSeq transcript (Entrez)NM_014175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL15
Cluster EST : UnigeneHs.18349 [ NCBI ]
CGAP (NCI)Hs.18349
Gene ExpressionMRPL15 [ NCBI-GEO ]   MRPL15 [ EBI - ARRAY_EXPRESS ]   MRPL15 [ SEEK ]   MRPL15 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29088
GTEX Portal (Tissue expression)MRPL15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P015   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P015  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P015
Splice isoforms : SwissVarQ9P015
PhosPhoSitePlusQ9P015
Domains : Interpro (EBI)Ribosomal_L15    Ribosomal_L15_bac-type    Ribosomal_L18e/L15P   
Domain families : Pfam (Sanger)Ribosomal_L27A (PF00828)   
Domain families : Pfam (NCBI)pfam00828   
Conserved Domain (NCBI)MRPL15
DMDM Disease mutations29088
Blocks (Seattle)MRPL15
PDB (SRS)3J7Y    3J9M   
PDB (PDBSum)3J7Y    3J9M   
PDB (IMB)3J7Y    3J9M   
PDB (RSDB)3J7Y    3J9M   
Structural Biology KnowledgeBase3J7Y    3J9M   
SCOP (Structural Classification of Proteins)3J7Y    3J9M   
CATH (Classification of proteins structures)3J7Y    3J9M   
SuperfamilyQ9P015
Peptide AtlasQ9P015
HPRD14742
IPIIPI00023086   IPI00974132   IPI00980704   
Protein Interaction databases
DIP (DOE-UCLA)Q9P015
IntAct (EBI)Q9P015
BioGRIDMRPL15
STRING (EMBL)MRPL15
ZODIACMRPL15
Ontologies - Pathways
QuickGOQ9P015
Ontology : AmiGORNA binding  structural constituent of ribosome  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL15
Atlas of Cancer Signalling NetworkMRPL15
Wikipedia pathwaysMRPL15
Orthology - Evolution
OrthoDB29088
Phylogenetic Trees/Animal Genes : TreeFamMRPL15
HOVERGENQ9P015
HOGENOMQ9P015
Homologs : HomoloGeneMRPL15
Homology/Alignments : Family Browser (UCSC)MRPL15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL15
dbVarMRPL15
ClinVarMRPL15
1000_GenomesMRPL15 
Exome Variant ServerMRPL15
ExAC (Exome Aggregation Consortium)MRPL15 (select the gene name)
Genetic variants : HAPMAP29088
Genomic Variants (DGV)MRPL15 [DGVbeta]
DECIPHERMRPL15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL15 
Mutations
ICGC Data PortalMRPL15 
TCGA Data PortalMRPL15 
Broad Tumor PortalMRPL15
OASIS PortalMRPL15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL15
DgiDB (Drug Gene Interaction Database)MRPL15
DoCM (Curated mutations)MRPL15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL15 (select a term)
intoGenMRPL15
Cancer3DMRPL15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611828   
Orphanet
MedgenMRPL15
Genetic Testing Registry MRPL15
NextProtQ9P015 [Medical]
TSGene29088
GENETestsMRPL15
Target ValidationMRPL15
Huge Navigator MRPL15 [HugePedia]
snp3D : Map Gene to Disease29088
BioCentury BCIQMRPL15
ClinGenMRPL15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29088
Chemical/Pharm GKB GenePA30944
Clinical trialMRPL15
Miscellaneous
canSAR (ICR)MRPL15 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL15
EVEXMRPL15
GoPubMedMRPL15
iHOPMRPL15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:26 CEST 2017

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