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MRPL16 (mitochondrial ribosomal protein L16)

Identity

Alias_symbol (synonym)FLJ20484
PNAS-111
Other aliasL16mt
MRP-L16
HGNC (Hugo) MRPL16
LocusID (NCBI) 54948
Atlas_Id 70438
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59806135 and ends at 59810872 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AR (Xq12) / MRPL16 (11q12.1)FAU (11q13.1) / MRPL16 (11q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL16   14476
Cards
Entrez_Gene (NCBI)MRPL16  54948  mitochondrial ribosomal protein L16
AliasesL16mt; MRP-L16; PNAS-111
GeneCards (Weizmann)MRPL16
Ensembl hg19 (Hinxton)ENSG00000166902 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166902 [Gene_View]  chr11:59806135-59810872 [Contig_View]  MRPL16 [Vega]
ICGC DataPortalENSG00000166902
TCGA cBioPortalMRPL16
AceView (NCBI)MRPL16
Genatlas (Paris)MRPL16
WikiGenes54948
SOURCE (Princeton)MRPL16
Genetics Home Reference (NIH)MRPL16
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL16  -     chr11:59806135-59810872 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL16  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblMRPL16 - 11q12.1 [CytoView hg19]  MRPL16 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIMRPL16 [Mapview hg19]  MRPL16 [Mapview hg38]
OMIM611829   
Gene and transcription
Genbank (Entrez)AA454132 AB049642 AF183428 AF275806 AK000491
RefSeq transcript (Entrez)NM_017840
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL16
Cluster EST : UnigeneHs.530734 [ NCBI ]
CGAP (NCI)Hs.530734
Alternative Splicing GalleryENSG00000166902
Gene ExpressionMRPL16 [ NCBI-GEO ]   MRPL16 [ EBI - ARRAY_EXPRESS ]   MRPL16 [ SEEK ]   MRPL16 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54948
GTEX Portal (Tissue expression)MRPL16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX20
Splice isoforms : SwissVarQ9NX20
PhosPhoSitePlusQ9NX20
Domains : Interpro (EBI)Ribosomal_L10e/L16    Ribosomal_L16   
Domain families : Pfam (Sanger)Ribosomal_L16 (PF00252)   
Domain families : Pfam (NCBI)pfam00252   
Conserved Domain (NCBI)MRPL16
DMDM Disease mutations54948
Blocks (Seattle)MRPL16
PDB (SRS)3J7Y    3J9M   
PDB (PDBSum)3J7Y    3J9M   
PDB (IMB)3J7Y    3J9M   
PDB (RSDB)3J7Y    3J9M   
Structural Biology KnowledgeBase3J7Y    3J9M   
SCOP (Structural Classification of Proteins)3J7Y    3J9M   
CATH (Classification of proteins structures)3J7Y    3J9M   
SuperfamilyQ9NX20
Human Protein AtlasENSG00000166902
Peptide AtlasQ9NX20
HPRD14743
IPIIPI00000821   IPI00980261   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX20
IntAct (EBI)Q9NX20
FunCoupENSG00000166902
BioGRIDMRPL16
STRING (EMBL)MRPL16
ZODIACMRPL16
Ontologies - Pathways
QuickGOQ9NX20
Ontology : AmiGOstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial large ribosomal subunit  rRNA binding  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial large ribosomal subunit  rRNA binding  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL16
Atlas of Cancer Signalling NetworkMRPL16
Wikipedia pathwaysMRPL16
Orthology - Evolution
OrthoDB54948
GeneTree (enSembl)ENSG00000166902
Phylogenetic Trees/Animal Genes : TreeFamMRPL16
HOVERGENQ9NX20
HOGENOMQ9NX20
Homologs : HomoloGeneMRPL16
Homology/Alignments : Family Browser (UCSC)MRPL16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL16
dbVarMRPL16
ClinVarMRPL16
1000_GenomesMRPL16 
Exome Variant ServerMRPL16
ExAC (Exome Aggregation Consortium)MRPL16 (select the gene name)
Genetic variants : HAPMAP54948
Genomic Variants (DGV)MRPL16 [DGVbeta]
DECIPHERMRPL16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL16 
Mutations
ICGC Data PortalMRPL16 
TCGA Data PortalMRPL16 
Broad Tumor PortalMRPL16
OASIS PortalMRPL16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL16
DgiDB (Drug Gene Interaction Database)MRPL16
DoCM (Curated mutations)MRPL16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL16 (select a term)
intoGenMRPL16
Cancer3DMRPL16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611829   
Orphanet
MedgenMRPL16
Genetic Testing Registry MRPL16
NextProtQ9NX20 [Medical]
TSGene54948
GENETestsMRPL16
Target ValidationMRPL16
Huge Navigator MRPL16 [HugePedia]
snp3D : Map Gene to Disease54948
BioCentury BCIQMRPL16
ClinGenMRPL16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54948
Chemical/Pharm GKB GenePA30945
Clinical trialMRPL16
Miscellaneous
canSAR (ICR)MRPL16 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL16
EVEXMRPL16
GoPubMedMRPL16
iHOPMRPL16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:10 CEST 2017

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