Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MRPL17 (mitochondrial ribosomal protein L17)

Identity

Alias_symbol (synonym)RPML26
MRP-L26
Other aliasL17mt
LIP2
MRP-L17
RPL17L
HGNC (Hugo) MRPL17
LocusID (NCBI) 63875
Atlas_Id 70439
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6680385 and ends at 6683401 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MRPL17   14053
Cards
Entrez_Gene (NCBI)MRPL17  63875  mitochondrial ribosomal protein L17
AliasesL17mt; LIP2; MRP-L17; MRP-L26; 
RPL17L; RPML26
GeneCards (Weizmann)MRPL17
Ensembl hg19 (Hinxton)ENSG00000158042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158042 [Gene_View]  chr11:6680385-6683401 [Contig_View]  MRPL17 [Vega]
ICGC DataPortalENSG00000158042
TCGA cBioPortalMRPL17
AceView (NCBI)MRPL17
Genatlas (Paris)MRPL17
WikiGenes63875
SOURCE (Princeton)MRPL17
Genetics Home Reference (NIH)MRPL17
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL17  -     chr11:6680385-6683401 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL17  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblMRPL17 - 11p15.4 [CytoView hg19]  MRPL17 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIMRPL17 [Mapview hg19]  MRPL17 [Mapview hg38]
OMIM611830   
Gene and transcription
Genbank (Entrez)AF141338 AF164797 AK026857 AL572779 BC012306
RefSeq transcript (Entrez)NM_022061
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL17
Cluster EST : UnigeneHs.708782 [ NCBI ]
CGAP (NCI)Hs.708782
Alternative Splicing GalleryENSG00000158042
Gene ExpressionMRPL17 [ NCBI-GEO ]   MRPL17 [ EBI - ARRAY_EXPRESS ]   MRPL17 [ SEEK ]   MRPL17 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63875
GTEX Portal (Tissue expression)MRPL17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRX2
Splice isoforms : SwissVarQ9NRX2
PhosPhoSitePlusQ9NRX2
Domains : Interpro (EBI)Ribosomal_L17   
Domain families : Pfam (Sanger)Ribosomal_L17 (PF01196)   
Domain families : Pfam (NCBI)pfam01196   
Conserved Domain (NCBI)MRPL17
DMDM Disease mutations63875
Blocks (Seattle)MRPL17
PDB (SRS)2CQM    3J7Y    3J9M   
PDB (PDBSum)2CQM    3J7Y    3J9M   
PDB (IMB)2CQM    3J7Y    3J9M   
PDB (RSDB)2CQM    3J7Y    3J9M   
Structural Biology KnowledgeBase2CQM    3J7Y    3J9M   
SCOP (Structural Classification of Proteins)2CQM    3J7Y    3J9M   
CATH (Classification of proteins structures)2CQM    3J7Y    3J9M   
SuperfamilyQ9NRX2
Human Protein AtlasENSG00000158042
Peptide AtlasQ9NRX2
HPRD10096
IPIIPI00172591   IPI00982310   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRX2
IntAct (EBI)Q9NRX2
FunCoupENSG00000158042
BioGRIDMRPL17
STRING (EMBL)MRPL17
ZODIACMRPL17
Ontologies - Pathways
QuickGOQ9NRX2
Ontology : AmiGOmitochondrial genome maintenance  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial large ribosomal subunit  protein domain specific binding  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBImitochondrial genome maintenance  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial large ribosomal subunit  protein domain specific binding  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL17
Atlas of Cancer Signalling NetworkMRPL17
Wikipedia pathwaysMRPL17
Orthology - Evolution
OrthoDB63875
GeneTree (enSembl)ENSG00000158042
Phylogenetic Trees/Animal Genes : TreeFamMRPL17
HOVERGENQ9NRX2
HOGENOMQ9NRX2
Homologs : HomoloGeneMRPL17
Homology/Alignments : Family Browser (UCSC)MRPL17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL17
dbVarMRPL17
ClinVarMRPL17
1000_GenomesMRPL17 
Exome Variant ServerMRPL17
ExAC (Exome Aggregation Consortium)MRPL17 (select the gene name)
Genetic variants : HAPMAP63875
Genomic Variants (DGV)MRPL17 [DGVbeta]
DECIPHERMRPL17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL17 
Mutations
ICGC Data PortalMRPL17 
TCGA Data PortalMRPL17 
Broad Tumor PortalMRPL17
OASIS PortalMRPL17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL17
DgiDB (Drug Gene Interaction Database)MRPL17
DoCM (Curated mutations)MRPL17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL17 (select a term)
intoGenMRPL17
Cancer3DMRPL17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611830   
Orphanet
MedgenMRPL17
Genetic Testing Registry MRPL17
NextProtQ9NRX2 [Medical]
TSGene63875
GENETestsMRPL17
Target ValidationMRPL17
Huge Navigator MRPL17 [HugePedia]
snp3D : Map Gene to Disease63875
BioCentury BCIQMRPL17
ClinGenMRPL17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63875
Chemical/Pharm GKB GenePA30946
Clinical trialMRPL17
Miscellaneous
canSAR (ICR)MRPL17 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL17
EVEXMRPL17
GoPubMedMRPL17
iHOPMRPL17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:27 CEST 2017
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