Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MRPL17 (mitochondrial ribosomal protein L17)

Identity

Alias (NCBI)L17mt
LIP2
MRP-L17
MRP-L26
RPL17L
RPML26
HGNC (Hugo) MRPL17
HGNC Alias symbRPML26
MRP-L26
LocusID (NCBI) 63875
Atlas_Id 70439
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6680385 and ends at 6683401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MRPL17   14053
Cards
Entrez_Gene (NCBI)MRPL17    mitochondrial ribosomal protein L17
AliasesL17mt; LIP2; MRP-L17; MRP-L26; 
RPL17L; RPML26
GeneCards (Weizmann)MRPL17
Ensembl hg19 (Hinxton)ENSG00000158042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158042 [Gene_View]  ENSG00000158042 [Sequence]  chr11:6680385-6683401 [Contig_View]  MRPL17 [Vega]
ICGC DataPortalENSG00000158042
TCGA cBioPortalMRPL17
AceView (NCBI)MRPL17
Genatlas (Paris)MRPL17
SOURCE (Princeton)MRPL17
Genetics Home Reference (NIH)MRPL17
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL17  -     chr11:6680385-6683401 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL17  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathMRPL17 - 11p15.4 [CytoView hg19]  MRPL17 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000158042
genome Data Viewer NCBIMRPL17 [Mapview hg19]  
OMIM611830   
Gene and transcription
Genbank (Entrez)AF141338 AF164797 AK026857 AL572779 BC012306
RefSeq transcript (Entrez)NM_022061
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL17
Alternative Splicing GalleryENSG00000158042
Gene ExpressionMRPL17 [ NCBI-GEO ]   MRPL17 [ EBI - ARRAY_EXPRESS ]   MRPL17 [ SEEK ]   MRPL17 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL17 [ Firebrowse - Broad ]
GenevisibleExpression of MRPL17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63875
GTEX Portal (Tissue expression)MRPL17
Human Protein AtlasENSG00000158042-MRPL17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRX2
Splice isoforms : SwissVarQ9NRX2
PhosPhoSitePlusQ9NRX2
Domains : Interpro (EBI)Ribosomal_L17    Ribosomal_L17_sf   
Domain families : Pfam (Sanger)Ribosomal_L17 (PF01196)   
Domain families : Pfam (NCBI)pfam01196   
Conserved Domain (NCBI)MRPL17
Blocks (Seattle)MRPL17
PDB (RSDB)2CQM    3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB Europe2CQM    3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB (PDBSum)2CQM    3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB (IMB)2CQM    3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
Structural Biology KnowledgeBase2CQM    3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
SCOP (Structural Classification of Proteins)2CQM    3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
CATH (Classification of proteins structures)2CQM    3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
SuperfamilyQ9NRX2
Human Protein Atlas [tissue]ENSG00000158042-MRPL17 [tissue]
Peptide AtlasQ9NRX2
HPRD10096
IPIIPI00172591   IPI00982310   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRX2
IntAct (EBI)Q9NRX2
BioGRIDMRPL17
STRING (EMBL)MRPL17
ZODIACMRPL17
Ontologies - Pathways
QuickGOQ9NRX2
Ontology : AmiGOstructural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  protein domain specific binding  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  protein domain specific binding  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL17
Atlas of Cancer Signalling NetworkMRPL17
Wikipedia pathwaysMRPL17
Orthology - Evolution
OrthoDB63875
GeneTree (enSembl)ENSG00000158042
Phylogenetic Trees/Animal Genes : TreeFamMRPL17
HOGENOMQ9NRX2
Homologs : HomoloGeneMRPL17
Homology/Alignments : Family Browser (UCSC)MRPL17
Gene fusions - Rearrangements
Fusion : QuiverMRPL17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL17 [hg38]
dbVarMRPL17
ClinVarMRPL17
MonarchMRPL17
1000_GenomesMRPL17 
Exome Variant ServerMRPL17
GNOMAD BrowserENSG00000158042
Varsome BrowserMRPL17
Genomic Variants (DGV)MRPL17 [DGVbeta]
DECIPHERMRPL17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL17 
Mutations
ICGC Data PortalMRPL17 
TCGA Data PortalMRPL17 
Broad Tumor PortalMRPL17
OASIS PortalMRPL17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMRPL17
Mutations and Diseases : HGMDMRPL17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL17
DgiDB (Drug Gene Interaction Database)MRPL17
DoCM (Curated mutations)MRPL17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL17 (select a term)
intoGenMRPL17
Cancer3DMRPL17(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611830   
Orphanet
DisGeNETMRPL17
MedgenMRPL17
Genetic Testing Registry MRPL17
NextProtQ9NRX2 [Medical]
GENETestsMRPL17
Target ValidationMRPL17
Huge Navigator MRPL17 [HugePedia]
ClinGenMRPL17
Clinical trials, drugs, therapy
MyCancerGenomeMRPL17
Protein Interactions : CTD
Pharm GKB GenePA30946
Clinical trialMRPL17
Miscellaneous
canSAR (ICR)MRPL17 (select the gene name)
HarmonizomeMRPL17
DataMed IndexMRPL17
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL17
EVEXMRPL17
GoPubMedMRPL17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:17:58 CET 2020
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