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MRPL18 (mitochondrial ribosomal protein L18)

Identity

Alias_symbol (synonym)HSPC071
Other aliasL18mt
MRP-L18
HGNC (Hugo) MRPL18
LocusID (NCBI) 29074
Atlas_Id 70440
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 159790446 and ends at 159798429 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPL18 (6q25.3) / TBCEL (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL18   14477
Cards
Entrez_Gene (NCBI)MRPL18  29074  mitochondrial ribosomal protein L18
AliasesHSPC071; L18mt; MRP-L18
GeneCards (Weizmann)MRPL18
Ensembl hg19 (Hinxton)ENSG00000112110 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112110 [Gene_View]  ENSG00000112110 [Sequence]  chr6:159790446-159798429 [Contig_View]  MRPL18 [Vega]
ICGC DataPortalENSG00000112110
TCGA cBioPortalMRPL18
AceView (NCBI)MRPL18
Genatlas (Paris)MRPL18
WikiGenes29074
SOURCE (Princeton)MRPL18
Genetics Home Reference (NIH)MRPL18
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL18  -     chr6:159790446-159798429 +  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL18  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblMRPL18 - 6q25.3 [CytoView hg19]  MRPL18 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBIMRPL18 [Mapview hg19]  MRPL18 [Mapview hg38]
OMIM611831   
Gene and transcription
Genbank (Entrez)AF161556 AK311391 AL136633 AM393775 AV756740
RefSeq transcript (Entrez)NM_001318817 NM_014161
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL18
Cluster EST : UnigeneHs.416998 [ NCBI ]
CGAP (NCI)Hs.416998
Alternative Splicing GalleryENSG00000112110
Gene ExpressionMRPL18 [ NCBI-GEO ]   MRPL18 [ EBI - ARRAY_EXPRESS ]   MRPL18 [ SEEK ]   MRPL18 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29074
GTEX Portal (Tissue expression)MRPL18
Human Protein AtlasENSG00000112110-MRPL18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0U6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0U6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0U6
Splice isoforms : SwissVarQ9H0U6
PhosPhoSitePlusQ9H0U6
Domains : Interpro (EBI)Ribosomal_L18   
Domain families : Pfam (Sanger)Ribosomal_L18p (PF00861)   
Domain families : Pfam (NCBI)pfam00861   
Conserved Domain (NCBI)MRPL18
DMDM Disease mutations29074
Blocks (Seattle)MRPL18
PDB (SRS)3J7Y   
PDB (PDBSum)3J7Y   
PDB (IMB)3J7Y   
PDB (RSDB)3J7Y   
Structural Biology KnowledgeBase3J7Y   
SCOP (Structural Classification of Proteins)3J7Y   
CATH (Classification of proteins structures)3J7Y   
SuperfamilyQ9H0U6
Human Protein Atlas [tissue]ENSG00000112110-MRPL18 [tissue]
Peptide AtlasQ9H0U6
HPRD14744
IPIIPI00160421   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0U6
IntAct (EBI)Q9H0U6
FunCoupENSG00000112110
BioGRIDMRPL18
STRING (EMBL)MRPL18
ZODIACMRPL18
Ontologies - Pathways
QuickGOQ9H0U6
Ontology : AmiGO###############################################################################################################################################################################################################################################################                      
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                      
NDEx NetworkMRPL18
Atlas of Cancer Signalling NetworkMRPL18
Wikipedia pathwaysMRPL18
Orthology - Evolution
OrthoDB29074
GeneTree (enSembl)ENSG00000112110
Phylogenetic Trees/Animal Genes : TreeFamMRPL18
HOVERGENQ9H0U6
HOGENOMQ9H0U6
Homologs : HomoloGeneMRPL18
Homology/Alignments : Family Browser (UCSC)MRPL18
Gene fusions - Rearrangements
Fusion : QuiverMRPL18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL18
dbVarMRPL18
ClinVarMRPL18
1000_GenomesMRPL18 
Exome Variant ServerMRPL18
ExAC (Exome Aggregation Consortium)ENSG00000112110
GNOMAD BrowserENSG00000112110
Varsome BrowserMRPL18
Genetic variants : HAPMAP29074
Genomic Variants (DGV)MRPL18 [DGVbeta]
DECIPHERMRPL18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL18 
Mutations
ICGC Data PortalMRPL18 
TCGA Data PortalMRPL18 
Broad Tumor PortalMRPL18
OASIS PortalMRPL18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL18
DgiDB (Drug Gene Interaction Database)MRPL18
DoCM (Curated mutations)MRPL18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL18 (select a term)
intoGenMRPL18
Cancer3DMRPL18(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611831   
Orphanet
DisGeNETMRPL18
MedgenMRPL18
Genetic Testing Registry MRPL18
NextProtQ9H0U6 [Medical]
TSGene29074
GENETestsMRPL18
Target ValidationMRPL18
Huge Navigator MRPL18 [HugePedia]
snp3D : Map Gene to Disease29074
BioCentury BCIQMRPL18
ClinGenMRPL18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29074
Chemical/Pharm GKB GenePA30947
Clinical trialMRPL18
Miscellaneous
canSAR (ICR)MRPL18 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL18
EVEXMRPL18
GoPubMedMRPL18
iHOPMRPL18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:18:28 CEST 2018

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