Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRPL20 (mitochondrial ribosomal protein L20)

Identity

Alias_symbol (synonym)FLJ10024
Other aliasL20mt
MRP-L20
HGNC (Hugo) MRPL20
LocusID (NCBI) 55052
Atlas_Id 70443
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1337276 and ends at 1342693 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL20   14478
Cards
Entrez_Gene (NCBI)MRPL20  55052  mitochondrial ribosomal protein L20
AliasesL20mt; MRP-L20
GeneCards (Weizmann)MRPL20
Ensembl hg19 (Hinxton)ENSG00000242485 [Gene_View]  chr1:1337276-1342693 [Contig_View]  MRPL20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000242485 [Gene_View]  chr1:1337276-1342693 [Contig_View]  MRPL20 [Vega]
ICGC DataPortalENSG00000242485
TCGA cBioPortalMRPL20
AceView (NCBI)MRPL20
Genatlas (Paris)MRPL20
WikiGenes55052
SOURCE (Princeton)MRPL20
Genetics Home Reference (NIH)MRPL20
Genomic and cartography
GoldenPath hg19 (UCSC)MRPL20  -     chr1:1337276-1342693 -  1p36.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPL20  -     1p36.33   [Description]    (hg38-Dec_2013)
EnsemblMRPL20 - 1p36.33 [CytoView hg19]  MRPL20 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIMRPL20 [Mapview hg19]  MRPL20 [Mapview hg38]
OMIM611833   
Gene and transcription
Genbank (Entrez)AB049644 AK000886 AK301440 AK315794 AW015403
RefSeq transcript (Entrez)NM_017971
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)MRPL20
Cluster EST : UnigeneHs.182698 [ NCBI ]
CGAP (NCI)Hs.182698
Alternative Splicing GalleryENSG00000242485
Gene ExpressionMRPL20 [ NCBI-GEO ]   MRPL20 [ EBI - ARRAY_EXPRESS ]   MRPL20 [ SEEK ]   MRPL20 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55052
GTEX Portal (Tissue expression)MRPL20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYC9
Splice isoforms : SwissVarQ9BYC9
PhosPhoSitePlusQ9BYC9
Domains : Interpro (EBI)Ribosomal_L20   
Domain families : Pfam (Sanger)Ribosomal_L20 (PF00453)   
Domain families : Pfam (NCBI)pfam00453   
Conserved Domain (NCBI)MRPL20
DMDM Disease mutations55052
Blocks (Seattle)MRPL20
PDB (SRS)3J7Y   
PDB (PDBSum)3J7Y   
PDB (IMB)3J7Y   
PDB (RSDB)3J7Y   
Structural Biology KnowledgeBase3J7Y   
SCOP (Structural Classification of Proteins)3J7Y   
CATH (Classification of proteins structures)3J7Y   
SuperfamilyQ9BYC9
Human Protein AtlasENSG00000242485
Peptide AtlasQ9BYC9
HPRD14746
IPIIPI00013706   IPI00386011   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYC9
IntAct (EBI)Q9BYC9
FunCoupENSG00000242485
BioGRIDMRPL20
STRING (EMBL)MRPL20
ZODIACMRPL20
Ontologies - Pathways
QuickGOQ9BYC9
Ontology : AmiGOstructural constituent of ribosome  protein binding  mitochondrial inner membrane  mitochondrial ribosome  organelle organization  rRNA binding  mitochondrial translation  poly(A) RNA binding  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  protein binding  mitochondrial inner membrane  mitochondrial ribosome  organelle organization  rRNA binding  mitochondrial translation  poly(A) RNA binding  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL20
Atlas of Cancer Signalling NetworkMRPL20
Wikipedia pathwaysMRPL20
Orthology - Evolution
OrthoDB55052
GeneTree (enSembl)ENSG00000242485
Phylogenetic Trees/Animal Genes : TreeFamMRPL20
HOVERGENQ9BYC9
HOGENOMQ9BYC9
Homologs : HomoloGeneMRPL20
Homology/Alignments : Family Browser (UCSC)MRPL20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL20
dbVarMRPL20
ClinVarMRPL20
1000_GenomesMRPL20 
Exome Variant ServerMRPL20
ExAC (Exome Aggregation Consortium)MRPL20 (select the gene name)
Genetic variants : HAPMAP55052
Genomic Variants (DGV)MRPL20 [DGVbeta]
DECIPHER (Syndromes)1:1337276-1342693  ENSG00000242485
CONAN: Copy Number AnalysisMRPL20 
Mutations
ICGC Data PortalMRPL20 
TCGA Data PortalMRPL20 
Broad Tumor PortalMRPL20
OASIS PortalMRPL20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL20
DgiDB (Drug Gene Interaction Database)MRPL20
DoCM (Curated mutations)MRPL20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL20 (select a term)
intoGenMRPL20
Cancer3DMRPL20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611833   
Orphanet
MedgenMRPL20
Genetic Testing Registry MRPL20
NextProtQ9BYC9 [Medical]
TSGene55052
GENETestsMRPL20
Huge Navigator MRPL20 [HugePedia]
snp3D : Map Gene to Disease55052
BioCentury BCIQMRPL20
ClinGenMRPL20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55052
Chemical/Pharm GKB GenePA30950
Clinical trialMRPL20
Miscellaneous
canSAR (ICR)MRPL20 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL20
EVEXMRPL20
GoPubMedMRPL20
iHOPMRPL20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:33:41 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.