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MRPL27 (mitochondrial ribosomal protein L27)

Identity

Other aliasL27mt
HGNC (Hugo) MRPL27
LocusID (NCBI) 51264
Atlas_Id 41427
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 48445228 and ends at 48450562 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HEATR5B (2p22.2) / MRPL27 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL27   14483
Cards
Entrez_Gene (NCBI)MRPL27  51264  mitochondrial ribosomal protein L27
AliasesL27mt
GeneCards (Weizmann)MRPL27
Ensembl hg19 (Hinxton)ENSG00000108826 [Gene_View]  chr17:48445228-48450562 [Contig_View]  MRPL27 [Vega]
Ensembl hg38 (Hinxton)ENSG00000108826 [Gene_View]  chr17:48445228-48450562 [Contig_View]  MRPL27 [Vega]
ICGC DataPortalENSG00000108826
TCGA cBioPortalMRPL27
AceView (NCBI)MRPL27
Genatlas (Paris)MRPL27
WikiGenes51264
SOURCE (Princeton)MRPL27
Genetics Home Reference (NIH)MRPL27
Genomic and cartography
GoldenPath hg19 (UCSC)MRPL27  -     chr17:48445228-48450562 -  17q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPL27  -     17q21.33   [Description]    (hg38-Dec_2013)
EnsemblMRPL27 - 17q21.33 [CytoView hg19]  MRPL27 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBIMRPL27 [Mapview hg19]  MRPL27 [Mapview hg38]
OMIM611837   
Gene and transcription
Genbank (Entrez)AB049647 AF151084 AK023576 AK315758 BC001066
RefSeq transcript (Entrez)NM_016504 NM_148570 NM_148571
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)MRPL27
Cluster EST : UnigeneHs.7736 [ NCBI ]
CGAP (NCI)Hs.7736
Alternative Splicing GalleryENSG00000108826
Gene ExpressionMRPL27 [ NCBI-GEO ]   MRPL27 [ EBI - ARRAY_EXPRESS ]   MRPL27 [ SEEK ]   MRPL27 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51264
GTEX Portal (Tissue expression)MRPL27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0M9
Splice isoforms : SwissVarQ9P0M9
PhosPhoSitePlusQ9P0M9
Domains : Interpro (EBI)Ribosomal_L27   
Domain families : Pfam (Sanger)Ribosomal_L27 (PF01016)   
Domain families : Pfam (NCBI)pfam01016   
Domain structure : Prodom (Prabi Lyon)Ribosomal_L27 (PD003114)   
Conserved Domain (NCBI)MRPL27
DMDM Disease mutations51264
Blocks (Seattle)MRPL27
PDB (SRS)3J7Y    3J9M   
PDB (PDBSum)3J7Y    3J9M   
PDB (IMB)3J7Y    3J9M   
PDB (RSDB)3J7Y    3J9M   
Structural Biology KnowledgeBase3J7Y    3J9M   
SCOP (Structural Classification of Proteins)3J7Y    3J9M   
CATH (Classification of proteins structures)3J7Y    3J9M   
SuperfamilyQ9P0M9
Human Protein AtlasENSG00000108826
Peptide AtlasQ9P0M9
HPRD14750
IPIIPI00009444   IPI00375343   IPI00965395   IPI00472168   IPI01013545   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0M9
IntAct (EBI)Q9P0M9
FunCoupENSG00000108826
BioGRIDMRPL27
STRING (EMBL)MRPL27
ZODIACMRPL27
Ontologies - Pathways
QuickGOQ9P0M9
Ontology : AmiGOstructural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  translation  poly(A) RNA binding  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  translation  poly(A) RNA binding  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL27
Atlas of Cancer Signalling NetworkMRPL27
Wikipedia pathwaysMRPL27
Orthology - Evolution
OrthoDB51264
GeneTree (enSembl)ENSG00000108826
Phylogenetic Trees/Animal Genes : TreeFamMRPL27
HOVERGENQ9P0M9
HOGENOMQ9P0M9
Homologs : HomoloGeneMRPL27
Homology/Alignments : Family Browser (UCSC)MRPL27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL27
dbVarMRPL27
ClinVarMRPL27
1000_GenomesMRPL27 
Exome Variant ServerMRPL27
ExAC (Exome Aggregation Consortium)MRPL27 (select the gene name)
Genetic variants : HAPMAP51264
Genomic Variants (DGV)MRPL27 [DGVbeta]
DECIPHER (Syndromes)17:48445228-48450562  ENSG00000108826
CONAN: Copy Number AnalysisMRPL27 
Mutations
ICGC Data PortalMRPL27 
TCGA Data PortalMRPL27 
Broad Tumor PortalMRPL27
OASIS PortalMRPL27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL27
DgiDB (Drug Gene Interaction Database)MRPL27
DoCM (Curated mutations)MRPL27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL27 (select a term)
intoGenMRPL27
Cancer3DMRPL27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611837   
Orphanet
MedgenMRPL27
Genetic Testing Registry MRPL27
NextProtQ9P0M9 [Medical]
TSGene51264
GENETestsMRPL27
Huge Navigator MRPL27 [HugePedia]
snp3D : Map Gene to Disease51264
BioCentury BCIQMRPL27
ClinGenMRPL27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51264
Chemical/Pharm GKB GenePA30957
Clinical trialMRPL27
Miscellaneous
canSAR (ICR)MRPL27 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL27
EVEXMRPL27
GoPubMedMRPL27
iHOPMRPL27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:17:22 CET 2017

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