Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRPL28 (mitochondrial ribosomal protein L28)

Identity

Alias_namesMAAT1
melanoma-associated antigen recognised by cytotoxic T lymphocytes
Alias_symbol (synonym)p15
Other alias
HGNC (Hugo) MRPL28
LocusID (NCBI) 10573
Atlas_Id 41428
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 367384 and ends at 370569 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPL28 (16p13.3) / RARRES3 (11q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL28   14484
Cards
Entrez_Gene (NCBI)MRPL28  10573  mitochondrial ribosomal protein L28
AliasesMAAT1; p15
GeneCards (Weizmann)MRPL28
Ensembl hg19 (Hinxton)ENSG00000086504 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000086504 [Gene_View]  chr16:367384-370569 [Contig_View]  MRPL28 [Vega]
ICGC DataPortalENSG00000086504
TCGA cBioPortalMRPL28
AceView (NCBI)MRPL28
Genatlas (Paris)MRPL28
WikiGenes10573
SOURCE (Princeton)MRPL28
Genetics Home Reference (NIH)MRPL28
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL28  -     chr16:367384-370569 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL28  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblMRPL28 - 16p13.3 [CytoView hg19]  MRPL28 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIMRPL28 [Mapview hg19]  MRPL28 [Mapview hg38]
OMIM604853   
Gene and transcription
Genbank (Entrez)AK096844 AK226042 AK315180 BC000507 BC000990
RefSeq transcript (Entrez)NM_006428
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL28
Cluster EST : UnigeneHs.513230 [ NCBI ]
CGAP (NCI)Hs.513230
Alternative Splicing GalleryENSG00000086504
Gene ExpressionMRPL28 [ NCBI-GEO ]   MRPL28 [ EBI - ARRAY_EXPRESS ]   MRPL28 [ SEEK ]   MRPL28 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10573
GTEX Portal (Tissue expression)MRPL28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13084   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13084  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13084
Splice isoforms : SwissVarQ13084
PhosPhoSitePlusQ13084
Domains : Interpro (EBI)Ribo_L28/L24   
Domain families : Pfam (Sanger)Ribosomal_L28 (PF00830)   
Domain families : Pfam (NCBI)pfam00830   
Conserved Domain (NCBI)MRPL28
DMDM Disease mutations10573
Blocks (Seattle)MRPL28
PDB (SRS)3J7Y   
PDB (PDBSum)3J7Y   
PDB (IMB)3J7Y   
PDB (RSDB)3J7Y   
Structural Biology KnowledgeBase3J7Y   
SCOP (Structural Classification of Proteins)3J7Y   
CATH (Classification of proteins structures)3J7Y   
SuperfamilyQ13084
Human Protein AtlasENSG00000086504
Peptide AtlasQ13084
IPIIPI00172594   IPI00941717   IPI00719120   IPI00658191   IPI00852855   IPI00852785   
Protein Interaction databases
DIP (DOE-UCLA)Q13084
IntAct (EBI)Q13084
FunCoupENSG00000086504
BioGRIDMRPL28
STRING (EMBL)MRPL28
ZODIACMRPL28
Ontologies - Pathways
QuickGOQ13084
Ontology : AmiGORNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial ribosome  mitochondrial large ribosomal subunit  cytosol  translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial ribosome  mitochondrial large ribosomal subunit  cytosol  translation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL28
Atlas of Cancer Signalling NetworkMRPL28
Wikipedia pathwaysMRPL28
Orthology - Evolution
OrthoDB10573
GeneTree (enSembl)ENSG00000086504
Phylogenetic Trees/Animal Genes : TreeFamMRPL28
HOVERGENQ13084
HOGENOMQ13084
Homologs : HomoloGeneMRPL28
Homology/Alignments : Family Browser (UCSC)MRPL28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL28
dbVarMRPL28
ClinVarMRPL28
1000_GenomesMRPL28 
Exome Variant ServerMRPL28
ExAC (Exome Aggregation Consortium)MRPL28 (select the gene name)
Genetic variants : HAPMAP10573
Genomic Variants (DGV)MRPL28 [DGVbeta]
DECIPHERMRPL28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL28 
Mutations
ICGC Data PortalMRPL28 
TCGA Data PortalMRPL28 
Broad Tumor PortalMRPL28
OASIS PortalMRPL28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL28
DgiDB (Drug Gene Interaction Database)MRPL28
DoCM (Curated mutations)MRPL28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL28 (select a term)
intoGenMRPL28
Cancer3DMRPL28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604853   
Orphanet
MedgenMRPL28
Genetic Testing Registry MRPL28
NextProtQ13084 [Medical]
TSGene10573
GENETestsMRPL28
Huge Navigator MRPL28 [HugePedia]
snp3D : Map Gene to Disease10573
BioCentury BCIQMRPL28
ClinGenMRPL28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10573
Chemical/Pharm GKB GenePA30515
Clinical trialMRPL28
Miscellaneous
canSAR (ICR)MRPL28 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL28
EVEXMRPL28
GoPubMedMRPL28
iHOPMRPL28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:27:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.