Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRPL3 (mitochondrial ribosomal protein L3)

Identity

Alias_namesRPML3
Alias_symbol (synonym)MRL3
Other aliasCOXPD9
HGNC (Hugo) MRPL3
LocusID (NCBI) 11222
Atlas_Id 70449
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 131181045 and ends at 131221860 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL3   10379
Cards
Entrez_Gene (NCBI)MRPL3  11222  mitochondrial ribosomal protein L3
AliasesCOXPD9; MRL3; RPML3
GeneCards (Weizmann)MRPL3
Ensembl hg19 (Hinxton)ENSG00000114686 [Gene_View]  chr3:131181045-131221860 [Contig_View]  MRPL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000114686 [Gene_View]  chr3:131181045-131221860 [Contig_View]  MRPL3 [Vega]
ICGC DataPortalENSG00000114686
TCGA cBioPortalMRPL3
AceView (NCBI)MRPL3
Genatlas (Paris)MRPL3
WikiGenes11222
SOURCE (Princeton)MRPL3
Genetics Home Reference (NIH)MRPL3
Genomic and cartography
GoldenPath hg19 (UCSC)MRPL3  -     chr3:131181045-131221860 -  3q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPL3  -     3q22.1   [Description]    (hg38-Dec_2013)
EnsemblMRPL3 - 3q22.1 [CytoView hg19]  MRPL3 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBIMRPL3 [Mapview hg19]  MRPL3 [Mapview hg38]
OMIM607118   614582   
Gene and transcription
Genbank (Entrez)AK296626 AK301377 BC003375 BI490082 BM992835
RefSeq transcript (Entrez)NM_007208
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_029207 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)MRPL3
Cluster EST : UnigeneHs.205163 [ NCBI ]
CGAP (NCI)Hs.205163
Alternative Splicing GalleryENSG00000114686
Gene ExpressionMRPL3 [ NCBI-GEO ]   MRPL3 [ EBI - ARRAY_EXPRESS ]   MRPL3 [ SEEK ]   MRPL3 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11222
GTEX Portal (Tissue expression)MRPL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09001   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09001  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09001
Splice isoforms : SwissVarP09001
PhosPhoSitePlusP09001
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L3 (PS00474)   
Domains : Interpro (EBI)Ribosomal_L3    Ribosomal_L3_bac/org-type    Ribosomal_L3_CS    Transl_B-barrel   
Domain families : Pfam (Sanger)Ribosomal_L3 (PF00297)   
Domain families : Pfam (NCBI)pfam00297   
Conserved Domain (NCBI)MRPL3
DMDM Disease mutations11222
Blocks (Seattle)MRPL3
PDB (SRS)3J7Y   
PDB (PDBSum)3J7Y   
PDB (IMB)3J7Y   
PDB (RSDB)3J7Y   
Structural Biology KnowledgeBase3J7Y   
SCOP (Structural Classification of Proteins)3J7Y   
CATH (Classification of proteins structures)3J7Y   
SuperfamilyP09001
Human Protein AtlasENSG00000114686
Peptide AtlasP09001
HPRD06175
IPIIPI00012353   IPI00967738   IPI00795627   IPI00793640   IPI00794210   IPI00963941   
Protein Interaction databases
DIP (DOE-UCLA)P09001
IntAct (EBI)P09001
FunCoupENSG00000114686
BioGRIDMRPL3
STRING (EMBL)MRPL3
ZODIACMRPL3
Ontologies - Pathways
QuickGOP09001
Ontology : AmiGORNA binding  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial large ribosomal subunit  translation  organelle organization  mitochondrial translation  poly(A) RNA binding  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial large ribosomal subunit  translation  organelle organization  mitochondrial translation  poly(A) RNA binding  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL3
Atlas of Cancer Signalling NetworkMRPL3
Wikipedia pathwaysMRPL3
Orthology - Evolution
OrthoDB11222
GeneTree (enSembl)ENSG00000114686
Phylogenetic Trees/Animal Genes : TreeFamMRPL3
HOVERGENP09001
HOGENOMP09001
Homologs : HomoloGeneMRPL3
Homology/Alignments : Family Browser (UCSC)MRPL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL3
dbVarMRPL3
ClinVarMRPL3
1000_GenomesMRPL3 
Exome Variant ServerMRPL3
ExAC (Exome Aggregation Consortium)MRPL3 (select the gene name)
Genetic variants : HAPMAP11222
Genomic Variants (DGV)MRPL3 [DGVbeta]
DECIPHER (Syndromes)3:131181045-131221860  ENSG00000114686
CONAN: Copy Number AnalysisMRPL3 
Mutations
ICGC Data PortalMRPL3 
TCGA Data PortalMRPL3 
Broad Tumor PortalMRPL3
OASIS PortalMRPL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL3
DgiDB (Drug Gene Interaction Database)MRPL3
DoCM (Curated mutations)MRPL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL3 (select a term)
intoGenMRPL3
Cancer3DMRPL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607118    614582   
Orphanet21664   
MedgenMRPL3
Genetic Testing Registry MRPL3
NextProtP09001 [Medical]
TSGene11222
GENETestsMRPL3
Huge Navigator MRPL3 [HugePedia]
snp3D : Map Gene to Disease11222
BioCentury BCIQMRPL3
ClinGenMRPL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11222
Chemical/Pharm GKB GenePA30960
Clinical trialMRPL3
Miscellaneous
canSAR (ICR)MRPL3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL3
EVEXMRPL3
GoPubMedMRPL3
iHOPMRPL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:33:42 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.