Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRPL30 (mitochondrial ribosomal protein L30)

Identity

Alias (NCBI)L28MT
L30MT
MRP-L28
MRP-L30
MRPL28
MRPL28M
RPML28
HGNC (Hugo) MRPL30
HGNC Alias symbMRP-L28
RPML28
LocusID (NCBI) 51263
Atlas_Id 70450
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 99181079 and ends at 99199557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPL30 (2q11.2) / CS (12q13.3)MRPL30 (2q11.2) / RPS23 (5q14.2)RPS23 (5q14.2) / MRPL30 (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)MRPL30   14036
Cards
Entrez_Gene (NCBI)MRPL30    mitochondrial ribosomal protein L30
AliasesL28MT; L30MT; MRP-L28; MRP-L30; 
MRPL28; MRPL28M; RPML28
GeneCards (Weizmann)MRPL30
Ensembl hg19 (Hinxton)ENSG00000185414 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185414 [Gene_View]  ENSG00000185414 [Sequence]  chr2:99181079-99199557 [Contig_View]  MRPL30 [Vega]
ICGC DataPortalENSG00000185414
TCGA cBioPortalMRPL30
AceView (NCBI)MRPL30
Genatlas (Paris)MRPL30
SOURCE (Princeton)MRPL30
Genetics Home Reference (NIH)MRPL30
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL30  -     chr2:99181079-99199557 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL30  -     2q11.2   [Description]    (hg19-Feb_2009)
GoldenPathMRPL30 - 2q11.2 [CytoView hg19]  MRPL30 - 2q11.2 [CytoView hg38]
ImmunoBaseENSG00000185414
genome Data Viewer NCBIMRPL30 [Mapview hg19]  
OMIM611838   
Gene and transcription
Genbank (Entrez)AK025547 AK225894 BC000217 BC013822 BC022391
RefSeq transcript (Entrez)NM_016503 NM_145212 NM_145213
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL30
Alternative Splicing GalleryENSG00000185414
Gene ExpressionMRPL30 [ NCBI-GEO ]   MRPL30 [ EBI - ARRAY_EXPRESS ]   MRPL30 [ SEEK ]   MRPL30 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL30 [ Firebrowse - Broad ]
GenevisibleExpression of MRPL30 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51263
GTEX Portal (Tissue expression)MRPL30
Human Protein AtlasENSG00000185414-MRPL30 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCC3
Splice isoforms : SwissVarQ8TCC3
PhosPhoSitePlusQ8TCC3
Domains : Interpro (EBI)L30_ferredoxin-like_sf    Ribosomal_L30_bac-type    Ribosomal_L30_ferredoxin-like   
Domain families : Pfam (Sanger)Ribosomal_L30 (PF00327)   
Domain families : Pfam (NCBI)pfam00327   
Conserved Domain (NCBI)MRPL30
Blocks (Seattle)MRPL30
PDB (RSDB)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB Europe3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB (PDBSum)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB (IMB)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
Structural Biology KnowledgeBase3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
SCOP (Structural Classification of Proteins)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
CATH (Classification of proteins structures)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
SuperfamilyQ8TCC3
Human Protein Atlas [tissue]ENSG00000185414-MRPL30 [tissue]
Peptide AtlasQ8TCC3
HPRD14751
IPIIPI00807606   IPI00917535   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCC3
IntAct (EBI)Q8TCC3
BioGRIDMRPL30
STRING (EMBL)MRPL30
ZODIACMRPL30
Ontologies - Pathways
QuickGOQ8TCC3
Ontology : AmiGOstructural constituent of ribosome  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL30
Atlas of Cancer Signalling NetworkMRPL30
Wikipedia pathwaysMRPL30
Orthology - Evolution
OrthoDB51263
GeneTree (enSembl)ENSG00000185414
Phylogenetic Trees/Animal Genes : TreeFamMRPL30
HOGENOMQ8TCC3
Homologs : HomoloGeneMRPL30
Homology/Alignments : Family Browser (UCSC)MRPL30
Gene fusions - Rearrangements
Fusion : QuiverMRPL30
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL30 [hg38]
dbVarMRPL30
ClinVarMRPL30
MonarchMRPL30
1000_GenomesMRPL30 
Exome Variant ServerMRPL30
GNOMAD BrowserENSG00000185414
Varsome BrowserMRPL30
Genomic Variants (DGV)MRPL30 [DGVbeta]
DECIPHERMRPL30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL30 
Mutations
ICGC Data PortalMRPL30 
TCGA Data PortalMRPL30 
Broad Tumor PortalMRPL30
OASIS PortalMRPL30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL30  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMRPL30
Mutations and Diseases : HGMDMRPL30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL30
DgiDB (Drug Gene Interaction Database)MRPL30
DoCM (Curated mutations)MRPL30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL30 (select a term)
intoGenMRPL30
Cancer3DMRPL30(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611838   
Orphanet
DisGeNETMRPL30
MedgenMRPL30
Genetic Testing Registry MRPL30
NextProtQ8TCC3 [Medical]
GENETestsMRPL30
Target ValidationMRPL30
Huge Navigator MRPL30 [HugePedia]
ClinGenMRPL30
Clinical trials, drugs, therapy
MyCancerGenomeMRPL30
Protein Interactions : CTD
Pharm GKB GenePA30961
Clinical trialMRPL30
Miscellaneous
canSAR (ICR)MRPL30 (select the gene name)
HarmonizomeMRPL30
DataMed IndexMRPL30
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL30
EVEXMRPL30
GoPubMedMRPL30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:18:00 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.