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MRPL34 (mitochondrial ribosomal protein L34)

Identity

Alias_symbol (synonym)L34mt
MGC2633
MGC24974
Other alias
HGNC (Hugo) MRPL34
LocusID (NCBI) 64981
Atlas_Id 70453
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17305668 and ends at 17306843 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPL34 (19p13.11) / DDA1 (19p13.11)TTN (2q31.2) / MRPL34 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL34   14488
Cards
Entrez_Gene (NCBI)MRPL34  64981  mitochondrial ribosomal protein L34
AliasesL34mt
GeneCards (Weizmann)MRPL34
Ensembl hg19 (Hinxton)ENSG00000130312 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130312 [Gene_View]  chr19:17305668-17306843 [Contig_View]  MRPL34 [Vega]
ICGC DataPortalENSG00000130312
TCGA cBioPortalMRPL34
AceView (NCBI)MRPL34
Genatlas (Paris)MRPL34
WikiGenes64981
SOURCE (Princeton)MRPL34
Genetics Home Reference (NIH)MRPL34
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL34  -     chr19:17305668-17306843 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL34  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblMRPL34 - 19p13.11 [CytoView hg19]  MRPL34 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIMRPL34 [Mapview hg19]  MRPL34 [Mapview hg38]
OMIM611840   
Gene and transcription
Genbank (Entrez)AB049652 BC000071 BC021801 JF432725
RefSeq transcript (Entrez)NM_023937
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL34
Cluster EST : UnigeneHs.515242 [ NCBI ]
CGAP (NCI)Hs.515242
Alternative Splicing GalleryENSG00000130312
Gene ExpressionMRPL34 [ NCBI-GEO ]   MRPL34 [ EBI - ARRAY_EXPRESS ]   MRPL34 [ SEEK ]   MRPL34 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64981
GTEX Portal (Tissue expression)MRPL34
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ48
Splice isoforms : SwissVarQ9BQ48
PhosPhoSitePlusQ9BQ48
Domains : Interpro (EBI)Ribosomal_L34   
Domain families : Pfam (Sanger)Ribosomal_L34 (PF00468)   
Domain families : Pfam (NCBI)pfam00468   
Domain structure : Prodom (Prabi Lyon)Ribosomal_L34 (PD003101)   
Conserved Domain (NCBI)MRPL34
DMDM Disease mutations64981
Blocks (Seattle)MRPL34
PDB (SRS)3J7Y    3J9M   
PDB (PDBSum)3J7Y    3J9M   
PDB (IMB)3J7Y    3J9M   
PDB (RSDB)3J7Y    3J9M   
Structural Biology KnowledgeBase3J7Y    3J9M   
SCOP (Structural Classification of Proteins)3J7Y    3J9M   
CATH (Classification of proteins structures)3J7Y    3J9M   
SuperfamilyQ9BQ48
Human Protein AtlasENSG00000130312
Peptide AtlasQ9BQ48
HPRD14754
IPIIPI00028390   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ48
IntAct (EBI)Q9BQ48
FunCoupENSG00000130312
BioGRIDMRPL34
STRING (EMBL)MRPL34
ZODIACMRPL34
Ontologies - Pathways
QuickGOQ9BQ48
Ontology : AmiGOstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial large ribosomal subunit  translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial large ribosomal subunit  translation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL34
Atlas of Cancer Signalling NetworkMRPL34
Wikipedia pathwaysMRPL34
Orthology - Evolution
OrthoDB64981
GeneTree (enSembl)ENSG00000130312
Phylogenetic Trees/Animal Genes : TreeFamMRPL34
HOVERGENQ9BQ48
HOGENOMQ9BQ48
Homologs : HomoloGeneMRPL34
Homology/Alignments : Family Browser (UCSC)MRPL34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL34
dbVarMRPL34
ClinVarMRPL34
1000_GenomesMRPL34 
Exome Variant ServerMRPL34
ExAC (Exome Aggregation Consortium)MRPL34 (select the gene name)
Genetic variants : HAPMAP64981
Genomic Variants (DGV)MRPL34 [DGVbeta]
DECIPHERMRPL34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL34 
Mutations
ICGC Data PortalMRPL34 
TCGA Data PortalMRPL34 
Broad Tumor PortalMRPL34
OASIS PortalMRPL34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL34
DgiDB (Drug Gene Interaction Database)MRPL34
DoCM (Curated mutations)MRPL34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL34 (select a term)
intoGenMRPL34
Cancer3DMRPL34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611840   
Orphanet
MedgenMRPL34
Genetic Testing Registry MRPL34
NextProtQ9BQ48 [Medical]
TSGene64981
GENETestsMRPL34
Target ValidationMRPL34
Huge Navigator MRPL34 [HugePedia]
snp3D : Map Gene to Disease64981
BioCentury BCIQMRPL34
ClinGenMRPL34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64981
Chemical/Pharm GKB GenePA30965
Clinical trialMRPL34
Miscellaneous
canSAR (ICR)MRPL34 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL34
EVEXMRPL34
GoPubMedMRPL34
iHOPMRPL34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:12 CEST 2017

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