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MRPL36 (mitochondrial ribosomal protein L36)

Identity

Alias_symbol (synonym)BRIP1
RPMJ
L36mt
PRPL36
MRP-L36
Other alias
HGNC (Hugo) MRPL36
LocusID (NCBI) 64979
Atlas_Id 53024
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 1798385 and ends at 1799842 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCL9 (1q21.2) / MRPL36 (5p15.33)FGD5 (3p25.1) / MRPL36 (5p15.33)MRPL36 (5p15.33) / BCL9 (1q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL36   14490
Cards
Entrez_Gene (NCBI)MRPL36  64979  mitochondrial ribosomal protein L36
AliasesBRIP1; L36mt; MRP-L36; PRPL36; 
RPMJ
GeneCards (Weizmann)MRPL36
Ensembl hg19 (Hinxton)ENSG00000171421 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171421 [Gene_View]  chr5:1798385-1799842 [Contig_View]  MRPL36 [Vega]
ICGC DataPortalENSG00000171421
TCGA cBioPortalMRPL36
AceView (NCBI)MRPL36
Genatlas (Paris)MRPL36
WikiGenes64979
SOURCE (Princeton)MRPL36
Genetics Home Reference (NIH)MRPL36
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL36  -     chr5:1798385-1799842 -  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL36  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblMRPL36 - 5p15.33 [CytoView hg19]  MRPL36 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBIMRPL36 [Mapview hg19]  MRPL36 [Mapview hg38]
OMIM611842   
Gene and transcription
Genbank (Entrez)AB049654 AF151109 AF155653 AK312001 BC020642
RefSeq transcript (Entrez)NM_032479
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL36
Cluster EST : UnigeneHs.719465 [ NCBI ]
CGAP (NCI)Hs.719465
Alternative Splicing GalleryENSG00000171421
Gene ExpressionMRPL36 [ NCBI-GEO ]   MRPL36 [ EBI - ARRAY_EXPRESS ]   MRPL36 [ SEEK ]   MRPL36 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64979
GTEX Portal (Tissue expression)MRPL36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0J6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0J6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0J6
Splice isoforms : SwissVarQ9P0J6
PhosPhoSitePlusQ9P0J6
Domains : Interpro (EBI)Ribosomal_L36   
Domain families : Pfam (Sanger)Ribosomal_L36 (PF00444)   
Domain families : Pfam (NCBI)pfam00444   
Conserved Domain (NCBI)MRPL36
DMDM Disease mutations64979
Blocks (Seattle)MRPL36
PDB (SRS)3J7Y    3J9M   
PDB (PDBSum)3J7Y    3J9M   
PDB (IMB)3J7Y    3J9M   
PDB (RSDB)3J7Y    3J9M   
Structural Biology KnowledgeBase3J7Y    3J9M   
SCOP (Structural Classification of Proteins)3J7Y    3J9M   
CATH (Classification of proteins structures)3J7Y    3J9M   
SuperfamilyQ9P0J6
Human Protein AtlasENSG00000171421
Peptide AtlasQ9P0J6
HPRD14756
IPIIPI00007622   IPI00964023   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0J6
IntAct (EBI)Q9P0J6
FunCoupENSG00000171421
BioGRIDMRPL36
STRING (EMBL)MRPL36
ZODIACMRPL36
Ontologies - Pathways
QuickGOQ9P0J6
Ontology : AmiGOstructural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  translation  nuclear body  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  translation  nuclear body  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL36
Atlas of Cancer Signalling NetworkMRPL36
Wikipedia pathwaysMRPL36
Orthology - Evolution
OrthoDB64979
GeneTree (enSembl)ENSG00000171421
Phylogenetic Trees/Animal Genes : TreeFamMRPL36
HOVERGENQ9P0J6
HOGENOMQ9P0J6
Homologs : HomoloGeneMRPL36
Homology/Alignments : Family Browser (UCSC)MRPL36
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL36
dbVarMRPL36
ClinVarMRPL36
1000_GenomesMRPL36 
Exome Variant ServerMRPL36
ExAC (Exome Aggregation Consortium)MRPL36 (select the gene name)
Genetic variants : HAPMAP64979
Genomic Variants (DGV)MRPL36 [DGVbeta]
DECIPHERMRPL36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL36 
Mutations
ICGC Data PortalMRPL36 
TCGA Data PortalMRPL36 
Broad Tumor PortalMRPL36
OASIS PortalMRPL36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL36
DgiDB (Drug Gene Interaction Database)MRPL36
DoCM (Curated mutations)MRPL36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL36 (select a term)
intoGenMRPL36
Cancer3DMRPL36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611842   
Orphanet
MedgenMRPL36
Genetic Testing Registry MRPL36
NextProtQ9P0J6 [Medical]
TSGene64979
GENETestsMRPL36
Target ValidationMRPL36
Huge Navigator MRPL36 [HugePedia]
snp3D : Map Gene to Disease64979
BioCentury BCIQMRPL36
ClinGenMRPL36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64979
Chemical/Pharm GKB GenePA30967
Clinical trialMRPL36
Miscellaneous
canSAR (ICR)MRPL36 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL36
EVEXMRPL36
GoPubMedMRPL36
iHOPMRPL36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:08:12 CEST 2017

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