Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MRPL38 (mitochondrial ribosomal protein L38)

Identity

Alias (NCBI)HSPC262
L38MT
MRP-L3
MRP-L38
RPML3
HGNC (Hugo) MRPL38
HGNC Alias symbRPML3
MRP-L3
HSPC262
MGC4810
LocusID (NCBI) 64978
Atlas_Id 70455
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75898643 and ends at 75905100 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPL38 (17q25.1) / MRPL38 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MRPL38   14033
Cards
Entrez_Gene (NCBI)MRPL38    mitochondrial ribosomal protein L38
AliasesHSPC262; L38MT; MRP-L3; MRP-L38; 
RPML3
GeneCards (Weizmann)MRPL38
Ensembl hg19 (Hinxton)ENSG00000204316 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204316 [Gene_View]  ENSG00000204316 [Sequence]  chr17:75898643-75905100 [Contig_View]  MRPL38 [Vega]
ICGC DataPortalENSG00000204316
TCGA cBioPortalMRPL38
AceView (NCBI)MRPL38
Genatlas (Paris)MRPL38
SOURCE (Princeton)MRPL38
Genetics Home Reference (NIH)MRPL38
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL38  -     chr17:75898643-75905100 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL38  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathMRPL38 - 17q25.1 [CytoView hg19]  MRPL38 - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000204316
genome Data Viewer NCBIMRPL38 [Mapview hg19]  
OMIM611844   
Gene and transcription
Genbank (Entrez)AF161380 AI126946 AK313283 BC013311 BC034460
RefSeq transcript (Entrez)NM_032478
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL38
Alternative Splicing GalleryENSG00000204316
Gene ExpressionMRPL38 [ NCBI-GEO ]   MRPL38 [ EBI - ARRAY_EXPRESS ]   MRPL38 [ SEEK ]   MRPL38 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL38 [ Firebrowse - Broad ]
GenevisibleExpression of MRPL38 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64978
GTEX Portal (Tissue expression)MRPL38
Human Protein AtlasENSG00000204316-MRPL38 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DV4
Splice isoforms : SwissVarQ96DV4
PhosPhoSitePlusQ96DV4
Domains : Interpro (EBI)PEBP    PEBP-like_sf    PEBP_euk   
Domain families : Pfam (Sanger)PBP (PF01161)   
Domain families : Pfam (NCBI)pfam01161   
Conserved Domain (NCBI)MRPL38
Blocks (Seattle)MRPL38
PDB (RSDB)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB Europe3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB (PDBSum)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB (IMB)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
Structural Biology KnowledgeBase3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
SCOP (Structural Classification of Proteins)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
CATH (Classification of proteins structures)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
SuperfamilyQ96DV4
Human Protein Atlas [tissue]ENSG00000204316-MRPL38 [tissue]
Peptide AtlasQ96DV4
HPRD14758
IPIIPI00783656   IPI00915896   IPI00917173   
Protein Interaction databases
DIP (DOE-UCLA)Q96DV4
IntAct (EBI)Q96DV4
BioGRIDMRPL38
STRING (EMBL)MRPL38
ZODIACMRPL38
Ontologies - Pathways
QuickGOQ96DV4
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL38
Atlas of Cancer Signalling NetworkMRPL38
Wikipedia pathwaysMRPL38
Orthology - Evolution
OrthoDB64978
GeneTree (enSembl)ENSG00000204316
Phylogenetic Trees/Animal Genes : TreeFamMRPL38
HOGENOMQ96DV4
Homologs : HomoloGeneMRPL38
Homology/Alignments : Family Browser (UCSC)MRPL38
Gene fusions - Rearrangements
Fusion : QuiverMRPL38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL38 [hg38]
dbVarMRPL38
ClinVarMRPL38
MonarchMRPL38
1000_GenomesMRPL38 
Exome Variant ServerMRPL38
GNOMAD BrowserENSG00000204316
Varsome BrowserMRPL38
Genomic Variants (DGV)MRPL38 [DGVbeta]
DECIPHERMRPL38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL38 
Mutations
ICGC Data PortalMRPL38 
TCGA Data PortalMRPL38 
Broad Tumor PortalMRPL38
OASIS PortalMRPL38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL38  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMRPL38
Mutations and Diseases : HGMDMRPL38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL38
DgiDB (Drug Gene Interaction Database)MRPL38
DoCM (Curated mutations)MRPL38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL38 (select a term)
intoGenMRPL38
Cancer3DMRPL38(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611844   
Orphanet
DisGeNETMRPL38
MedgenMRPL38
Genetic Testing Registry MRPL38
NextProtQ96DV4 [Medical]
GENETestsMRPL38
Target ValidationMRPL38
Huge Navigator MRPL38 [HugePedia]
ClinGenMRPL38
Clinical trials, drugs, therapy
MyCancerGenomeMRPL38
Protein Interactions : CTD
Pharm GKB GenePA30969
Clinical trialMRPL38
Miscellaneous
canSAR (ICR)MRPL38 (select the gene name)
HarmonizomeMRPL38
DataMed IndexMRPL38
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL38
EVEXMRPL38
GoPubMedMRPL38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:18:01 CET 2020
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