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MRPL39 (mitochondrial ribosomal protein L39)

Identity

Alias (NCBI)C21orf92
L39mt
L5mt
MRP-L5
MRPL5
MSTP003
PRED22
PRED66
RPML5
HGNC (Hugo) MRPL39
HGNC Alias symbRPML5
MRP-L5
MGC104174
PRED66
PRED22
C21orf92
L39mt
MSTP003
MGC3400
FLJ20451
LocusID (NCBI) 54148
Atlas_Id 57965
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 25585656 and ends at 25607481 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BMPR1B (4q22.3) / MRPL39 (21q21.3)MRPL39 (21q21.3) / SLC35G6 (17p13.1)PABPC1L (20q13.12) / MRPL39 (21q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(17;21)(p13;q21) MRPL39/SLC35G6


External links

Nomenclature
HGNC (Hugo)MRPL39   14027
Cards
Entrez_Gene (NCBI)MRPL39  54148  mitochondrial ribosomal protein L39
AliasesC21orf92; L39mt; L5mt; MRP-L5; 
MRPL5; MSTP003; PRED22; PRED66; RPML5
GeneCards (Weizmann)MRPL39
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr21:25585656-25607481 [Contig_View]  MRPL39 [Vega]
TCGA cBioPortalMRPL39
AceView (NCBI)MRPL39
Genatlas (Paris)MRPL39
WikiGenes54148
SOURCE (Princeton)MRPL39
Genetics Home Reference (NIH)MRPL39
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL39  -     chr21:25585656-25607481 -  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL39  -     21q21.3   [Description]    (hg19-Feb_2009)
GoldenPathMRPL39 - 21q21.3 [CytoView hg19]  MRPL39 - 21q21.3 [CytoView hg38]
genome Data Viewer NCBIMRPL39 [Mapview hg19]  
OMIM611845   
Gene and transcription
Genbank (Entrez)AF109357 AF239727 AF270511 AK000458 AK225878
RefSeq transcript (Entrez)NM_017446 NM_080794
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL39
Gene ExpressionMRPL39 [ NCBI-GEO ]   MRPL39 [ EBI - ARRAY_EXPRESS ]   MRPL39 [ SEEK ]   MRPL39 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL39 [ Firebrowse - Broad ]
GenevisibleExpression of MRPL39 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54148
GTEX Portal (Tissue expression)MRPL39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYK5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYK5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYK5
Splice isoforms : SwissVarQ9NYK5
PhosPhoSitePlusQ9NYK5
Domaine pattern : Prosite (Expaxy)TGS (PS51880)   
Domains : Interpro (EBI)Beta-grasp_dom_sf    TGS-like    Thr/Ala-tRNA-synth_IIc_edit   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MRPL39
DMDM Disease mutations54148
Blocks (Seattle)MRPL39
PDB (RSDB)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB Europe3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB (PDBSum)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
PDB (IMB)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
Structural Biology KnowledgeBase3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
SCOP (Structural Classification of Proteins)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
CATH (Classification of proteins structures)3J7Y    3J9M    5OOL    5OOM    6NU2    6NU3   
SuperfamilyQ9NYK5
Peptide AtlasQ9NYK5
IPIIPI00295427   IPI00084571   IPI00794240   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYK5
IntAct (EBI)Q9NYK5
BioGRIDMRPL39
STRING (EMBL)MRPL39
ZODIACMRPL39
Ontologies - Pathways
QuickGOQ9NYK5
Ontology : AmiGOnucleotide binding  RNA binding  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBInucleotide binding  RNA binding  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL39
Atlas of Cancer Signalling NetworkMRPL39
Wikipedia pathwaysMRPL39
Orthology - Evolution
OrthoDB54148
Phylogenetic Trees/Animal Genes : TreeFamMRPL39
HOGENOMQ9NYK5
Homologs : HomoloGeneMRPL39
Homology/Alignments : Family Browser (UCSC)MRPL39
Gene fusions - Rearrangements
Fusion : QuiverMRPL39
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL39
dbVarMRPL39
ClinVarMRPL39
MonarchMRPL39
1000_GenomesMRPL39 
Exome Variant ServerMRPL39
Varsome BrowserMRPL39
Genetic variants : HAPMAP54148
Genomic Variants (DGV)MRPL39 [DGVbeta]
DECIPHERMRPL39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL39 
Mutations
ICGC Data PortalMRPL39 
TCGA Data PortalMRPL39 
Broad Tumor PortalMRPL39
OASIS PortalMRPL39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL39  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMRPL39
Mutations and Diseases : HGMDMRPL39
BioMutasearch MRPL39
DgiDB (Drug Gene Interaction Database)MRPL39
DoCM (Curated mutations)MRPL39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL39 (select a term)
intoGenMRPL39
Cancer3DMRPL39(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611845   
Orphanet
DisGeNETMRPL39
MedgenMRPL39
Genetic Testing Registry MRPL39
NextProtQ9NYK5 [Medical]
TSGene54148
GENETestsMRPL39
Target ValidationMRPL39
Huge Navigator MRPL39 [HugePedia]
snp3D : Map Gene to Disease54148
BioCentury BCIQMRPL39
ClinGenMRPL39
Clinical trials, drugs, therapy
Protein Interactions : CTD54148
Pharm GKB GenePA30970
Clinical trialMRPL39
Miscellaneous
canSAR (ICR)MRPL39 (select the gene name)
HarmonizomeMRPL39
DataMed IndexMRPL39
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL39
EVEXMRPL39
GoPubMedMRPL39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:22:50 CEST 2020

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