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MRPL42 (mitochondrial ribosomal protein L42)

Identity

Alias (NCBI)HSPC204
L31MT
L42MT
MRP-L31
MRP-L42
MRP-S32
MRPL31
MRPS32
PTD007
RPML31
S32MT
HGNC (Hugo) MRPL42
HGNC Alias symbMRPS32
MRP-L31
RPML31
PTD007
HSPC204
MRPL31
HGNC Alias namemitochondrial ribosomal protein S32
LocusID (NCBI) 28977
Atlas_Id 57951
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 93467514 and ends at 93516214 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CBFB (16q22.1)::MRPL42 (12q22)MRPL42 (12q22)::ELL3 (15q15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MRPL42   14493
Cards
Entrez_Gene (NCBI)MRPL42    mitochondrial ribosomal protein L42
AliasesHSPC204; L31MT; L42MT; MRP-L31; 
MRP-L42; MRP-S32; MRPL31; MRPS32; PTD007; RPML31; S32MT
GeneCards (Weizmann)MRPL42
Ensembl hg19 (Hinxton)ENSG00000198015 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198015 [Gene_View]  ENSG00000198015 [Sequence]  chr12:93467514-93516214 [Contig_View]  MRPL42 [Vega]
ICGC DataPortalENSG00000198015
TCGA cBioPortalMRPL42
AceView (NCBI)MRPL42
Genatlas (Paris)MRPL42
SOURCE (Princeton)MRPL42
Genetics Home Reference (NIH)MRPL42
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL42  -     chr12:93467514-93516214 +  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL42  -     12q22   [Description]    (hg19-Feb_2009)
GoldenPathMRPL42 - 12q22 [CytoView hg19]  MRPL42 - 12q22 [CytoView hg38]
ImmunoBaseENSG00000198015
Genome Data Viewer NCBIMRPL42 [Mapview hg19]  
OMIM611847   
Gene and transcription
Genbank (Entrez)AA211087 AF078860 AF135160 AF151038 AK000285
RefSeq transcript (Entrez)NM_014050 NM_172177 NM_172178
Consensus coding sequences : CCDS (NCBI)MRPL42
Gene ExpressionMRPL42 [ NCBI-GEO ]   MRPL42 [ EBI - ARRAY_EXPRESS ]   MRPL42 [ SEEK ]   MRPL42 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL42 [ Firebrowse - Broad ]
GenevisibleExpression of MRPL42 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28977
GTEX Portal (Tissue expression)MRPL42
Human Protein AtlasENSG00000198015-MRPL42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6G3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6G3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6G3
PhosPhoSitePlusQ9Y6G3
Domains : Interpro (EBI)MRPL42   
Domain families : Pfam (Sanger)MRP-S32 (PF10210)   
Domain families : Pfam (NCBI)pfam10210   
Conserved Domain (NCBI)MRPL42
PDB (RSDB)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB Europe3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (PDBSum)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (IMB)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
Structural Biology KnowledgeBase3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SCOP (Structural Classification of Proteins)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
CATH (Classification of proteins structures)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SuperfamilyQ9Y6G3
AlphaFold pdb e-kbQ9Y6G3   
Human Protein Atlas [tissue]ENSG00000198015-MRPL42 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6G3
IntAct (EBI)Q9Y6G3
BioGRIDMRPL42
STRING (EMBL)MRPL42
ZODIACMRPL42
Ontologies - Pathways
QuickGOQ9Y6G3
Ontology : AmiGORNA binding  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  mitochondrial small ribosomal subunit  plasma membrane  translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial large ribosomal subunit  mitochondrial small ribosomal subunit  plasma membrane  translation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL42
Atlas of Cancer Signalling NetworkMRPL42
Wikipedia pathwaysMRPL42
Orthology - Evolution
OrthoDB28977
GeneTree (enSembl)ENSG00000198015
Phylogenetic Trees/Animal Genes : TreeFamMRPL42
Homologs : HomoloGeneMRPL42
Homology/Alignments : Family Browser (UCSC)MRPL42
Gene fusions - Rearrangements
Fusion : QuiverMRPL42
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL42
dbVarMRPL42
ClinVarMRPL42
MonarchMRPL42
1000_GenomesMRPL42 
Exome Variant ServerMRPL42
GNOMAD BrowserENSG00000198015
Varsome BrowserMRPL42
ACMGMRPL42 variants
VarityQ9Y6G3
Genomic Variants (DGV)MRPL42 [DGVbeta]
DECIPHERMRPL42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL42 
Mutations
ICGC Data PortalMRPL42 
TCGA Data PortalMRPL42 
Broad Tumor PortalMRPL42
OASIS PortalMRPL42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL42  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMRPL42
Mutations and Diseases : HGMDMRPL42
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMRPL42
DgiDB (Drug Gene Interaction Database)MRPL42
DoCM (Curated mutations)MRPL42
CIViC (Clinical Interpretations of Variants in Cancer)MRPL42
Cancer3DMRPL42
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611847   
Orphanet
DisGeNETMRPL42
MedgenMRPL42
Genetic Testing Registry MRPL42
NextProtQ9Y6G3 [Medical]
GENETestsMRPL42
Target ValidationMRPL42
Huge Navigator MRPL42 [HugePedia]
ClinGenMRPL42
Clinical trials, drugs, therapy
MyCancerGenomeMRPL42
Protein Interactions : CTDMRPL42
Pharm GKB GenePA30974
PharosQ9Y6G3
Clinical trialMRPL42
Miscellaneous
canSAR (ICR)MRPL42
HarmonizomeMRPL42
ARCHS4MRPL42
DataMed IndexMRPL42
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMRPL42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:23:17 CET 2022

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