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MRPL42 (mitochondrial ribosomal protein L42)

Identity

Alias_symbol (synonym)MRPS32
MRP-L31
RPML31
PTD007
HSPC204
MRPL31
Other aliasL31MT
L42MT
MRP-L42
MRP-S32
S32MT
HGNC (Hugo) MRPL42
LocusID (NCBI) 28977
Atlas_Id 70457
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 93467490 and ends at 93503772 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CBFB (16q22.1) / MRPL42 (12q22)MRPL42 (12q22) / ELL3 (15q15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL42   14493
Cards
Entrez_Gene (NCBI)MRPL42  28977  mitochondrial ribosomal protein L42
AliasesHSPC204; L31MT; L42MT; MRP-L31; 
MRP-L42; MRP-S32; MRPL31; MRPS32; PTD007; RPML31; S32MT
GeneCards (Weizmann)MRPL42
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:93467490-93503772 [Contig_View]  MRPL42 [Vega]
TCGA cBioPortalMRPL42
AceView (NCBI)MRPL42
Genatlas (Paris)MRPL42
WikiGenes28977
SOURCE (Princeton)MRPL42
Genetics Home Reference (NIH)MRPL42
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL42  -     chr12:93467490-93503772 +  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL42  -     12q22   [Description]    (hg19-Feb_2009)
EnsemblMRPL42 - 12q22 [CytoView hg19]  MRPL42 - 12q22 [CytoView hg38]
Mapping of homologs : NCBIMRPL42 [Mapview hg19]  MRPL42 [Mapview hg38]
OMIM611847   
Gene and transcription
Genbank (Entrez)AA211087 AF078860 AF135160 AF151038 AK000285
RefSeq transcript (Entrez)NM_014050 NM_172177 NM_172178
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL42
Cluster EST : UnigeneHs.199579 [ NCBI ]
CGAP (NCI)Hs.199579
Gene ExpressionMRPL42 [ NCBI-GEO ]   MRPL42 [ EBI - ARRAY_EXPRESS ]   MRPL42 [ SEEK ]   MRPL42 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28977
GTEX Portal (Tissue expression)MRPL42
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6G3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6G3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6G3
Splice isoforms : SwissVarQ9Y6G3
PhosPhoSitePlusQ9Y6G3
Domains : Interpro (EBI)Ribosomal-S32_mit   
Domain families : Pfam (Sanger)MRP-S32 (PF10210)   
Domain families : Pfam (NCBI)pfam10210   
Conserved Domain (NCBI)MRPL42
DMDM Disease mutations28977
Blocks (Seattle)MRPL42
PDB (SRS)3J7Y    3J9M   
PDB (PDBSum)3J7Y    3J9M   
PDB (IMB)3J7Y    3J9M   
PDB (RSDB)3J7Y    3J9M   
Structural Biology KnowledgeBase3J7Y    3J9M   
SCOP (Structural Classification of Proteins)3J7Y    3J9M   
CATH (Classification of proteins structures)3J7Y    3J9M   
SuperfamilyQ9Y6G3
Peptide AtlasQ9Y6G3
HPRD14761
IPIIPI00022320   IPI00332525   IPI00470907   IPI01022022   IPI01021754   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6G3
IntAct (EBI)Q9Y6G3
BioGRIDMRPL42
STRING (EMBL)MRPL42
ZODIACMRPL42
Ontologies - Pathways
QuickGOQ9Y6G3
Ontology : AmiGORNA binding  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial small ribosomal subunit  plasma membrane  translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial small ribosomal subunit  plasma membrane  translation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL42
Atlas of Cancer Signalling NetworkMRPL42
Wikipedia pathwaysMRPL42
Orthology - Evolution
OrthoDB28977
Phylogenetic Trees/Animal Genes : TreeFamMRPL42
HOVERGENQ9Y6G3
HOGENOMQ9Y6G3
Homologs : HomoloGeneMRPL42
Homology/Alignments : Family Browser (UCSC)MRPL42
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL42
dbVarMRPL42
ClinVarMRPL42
1000_GenomesMRPL42 
Exome Variant ServerMRPL42
ExAC (Exome Aggregation Consortium)MRPL42 (select the gene name)
Genetic variants : HAPMAP28977
Genomic Variants (DGV)MRPL42 [DGVbeta]
DECIPHERMRPL42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL42 
Mutations
ICGC Data PortalMRPL42 
TCGA Data PortalMRPL42 
Broad Tumor PortalMRPL42
OASIS PortalMRPL42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL42
DgiDB (Drug Gene Interaction Database)MRPL42
DoCM (Curated mutations)MRPL42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL42 (select a term)
intoGenMRPL42
Cancer3DMRPL42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611847   
Orphanet
MedgenMRPL42
Genetic Testing Registry MRPL42
NextProtQ9Y6G3 [Medical]
TSGene28977
GENETestsMRPL42
Target ValidationMRPL42
Huge Navigator MRPL42 [HugePedia]
snp3D : Map Gene to Disease28977
BioCentury BCIQMRPL42
ClinGenMRPL42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28977
Chemical/Pharm GKB GenePA30974
Clinical trialMRPL42
Miscellaneous
canSAR (ICR)MRPL42 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL42
EVEXMRPL42
GoPubMedMRPL42
iHOPMRPL42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:13 CEST 2017

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