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MRPL50 (mitochondrial ribosomal protein L50)

Identity

Alias_symbol (synonym)FLJ20493
MRP-L50
Other alias
HGNC (Hugo) MRPL50
LocusID (NCBI) 54534
Atlas_Id 70465
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 101389967 and ends at 101398637 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPL50 (9q31.1) / ERP44 (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL50   16654
Cards
Entrez_Gene (NCBI)MRPL50  54534  mitochondrial ribosomal protein L50
AliasesMRP-L50
GeneCards (Weizmann)MRPL50
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:101389967-101398637 [Contig_View]  MRPL50 [Vega]
TCGA cBioPortalMRPL50
AceView (NCBI)MRPL50
Genatlas (Paris)MRPL50
WikiGenes54534
SOURCE (Princeton)MRPL50
Genetics Home Reference (NIH)MRPL50
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL50  -     chr9:101389967-101398637 -  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL50  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblMRPL50 - 9q31.1 [CytoView hg19]  MRPL50 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIMRPL50 [Mapview hg19]  MRPL50 [Mapview hg38]
OMIM611854   
Gene and transcription
Genbank (Entrez)AK000500 AK295521 BC015133 BC032008 CN388719
RefSeq transcript (Entrez)NM_019051
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL50
Cluster EST : UnigeneHs.713644 [ NCBI ]
CGAP (NCI)Hs.713644
Gene ExpressionMRPL50 [ NCBI-GEO ]   MRPL50 [ EBI - ARRAY_EXPRESS ]   MRPL50 [ SEEK ]   MRPL50 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54534
GTEX Portal (Tissue expression)MRPL50
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5N7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5N7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5N7
Splice isoforms : SwissVarQ8N5N7
PhosPhoSitePlusQ8N5N7
Domains : Interpro (EBI)Ribosomal_L50_mt   
Domain families : Pfam (Sanger)Ribosomal_L50 (PF10501)   
Domain families : Pfam (NCBI)pfam10501   
Conserved Domain (NCBI)MRPL50
DMDM Disease mutations54534
Blocks (Seattle)MRPL50
PDB (SRS)3J7Y    3J9M   
PDB (PDBSum)3J7Y    3J9M   
PDB (IMB)3J7Y    3J9M   
PDB (RSDB)3J7Y    3J9M   
Structural Biology KnowledgeBase3J7Y    3J9M   
SCOP (Structural Classification of Proteins)3J7Y    3J9M   
CATH (Classification of proteins structures)3J7Y    3J9M   
SuperfamilyQ8N5N7
Peptide AtlasQ8N5N7
HPRD14768
IPIIPI00329036   IPI00922343   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5N7
IntAct (EBI)Q8N5N7
BioGRIDMRPL50
STRING (EMBL)MRPL50
ZODIACMRPL50
Ontologies - Pathways
QuickGOQ8N5N7
Ontology : AmiGOmitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBImitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL50
Atlas of Cancer Signalling NetworkMRPL50
Wikipedia pathwaysMRPL50
Orthology - Evolution
OrthoDB54534
Phylogenetic Trees/Animal Genes : TreeFamMRPL50
HOVERGENQ8N5N7
HOGENOMQ8N5N7
Homologs : HomoloGeneMRPL50
Homology/Alignments : Family Browser (UCSC)MRPL50
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL50
dbVarMRPL50
ClinVarMRPL50
1000_GenomesMRPL50 
Exome Variant ServerMRPL50
ExAC (Exome Aggregation Consortium)MRPL50 (select the gene name)
Genetic variants : HAPMAP54534
Genomic Variants (DGV)MRPL50 [DGVbeta]
DECIPHERMRPL50 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL50 
Mutations
ICGC Data PortalMRPL50 
TCGA Data PortalMRPL50 
Broad Tumor PortalMRPL50
OASIS PortalMRPL50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL50
DgiDB (Drug Gene Interaction Database)MRPL50
DoCM (Curated mutations)MRPL50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL50 (select a term)
intoGenMRPL50
Cancer3DMRPL50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611854   
Orphanet
MedgenMRPL50
Genetic Testing Registry MRPL50
NextProtQ8N5N7 [Medical]
TSGene54534
GENETestsMRPL50
Huge Navigator MRPL50 [HugePedia]
snp3D : Map Gene to Disease54534
BioCentury BCIQMRPL50
ClinGenMRPL50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54534
Chemical/Pharm GKB GenePA30983
Clinical trialMRPL50
Miscellaneous
canSAR (ICR)MRPL50 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL50
EVEXMRPL50
GoPubMedMRPL50
iHOPMRPL50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:43:49 CEST 2017

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