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MRPL54 (mitochondrial ribosomal protein L54)

Identity

Other aliasL54mt
MRP-L54
HGNC (Hugo) MRPL54
LocusID (NCBI) 116541
Atlas_Id 70468
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3762667 and ends at 3767565 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL54   16685
Cards
Entrez_Gene (NCBI)MRPL54  116541  mitochondrial ribosomal protein L54
AliasesL54mt; MRP-L54
GeneCards (Weizmann)MRPL54
Ensembl hg19 (Hinxton)ENSG00000183617 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183617 [Gene_View]  chr19:3762667-3767565 [Contig_View]  MRPL54 [Vega]
ICGC DataPortalENSG00000183617
TCGA cBioPortalMRPL54
AceView (NCBI)MRPL54
Genatlas (Paris)MRPL54
WikiGenes116541
SOURCE (Princeton)MRPL54
Genetics Home Reference (NIH)MRPL54
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL54  -     chr19:3762667-3767565 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL54  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblMRPL54 - 19p13.3 [CytoView hg19]  MRPL54 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIMRPL54 [Mapview hg19]  MRPL54 [Mapview hg38]
OMIM611858   
Gene and transcription
Genbank (Entrez)AA340000 BC065273 BF346319 BM792364 BQ061807
RefSeq transcript (Entrez)NM_172251
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL54
Cluster EST : UnigeneHs.356578 [ NCBI ]
CGAP (NCI)Hs.356578
Alternative Splicing GalleryENSG00000183617
Gene ExpressionMRPL54 [ NCBI-GEO ]   MRPL54 [ EBI - ARRAY_EXPRESS ]   MRPL54 [ SEEK ]   MRPL54 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116541
GTEX Portal (Tissue expression)MRPL54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P161   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P161  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P161
Splice isoforms : SwissVarQ6P161
PhosPhoSitePlusQ6P161
Domains : Interpro (EBI)Ribosomal_L37_mit   
Domain families : Pfam (Sanger)Ribosomal_L37 (PF08561)   
Domain families : Pfam (NCBI)pfam08561   
Conserved Domain (NCBI)MRPL54
DMDM Disease mutations116541
Blocks (Seattle)MRPL54
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyQ6P161
Human Protein AtlasENSG00000183617
Peptide AtlasQ6P161
HPRD14772
IPIIPI00332157   
Protein Interaction databases
DIP (DOE-UCLA)Q6P161
IntAct (EBI)Q6P161
FunCoupENSG00000183617
BioGRIDMRPL54
STRING (EMBL)MRPL54
ZODIACMRPL54
Ontologies - Pathways
QuickGOQ6P161
Ontology : AmiGORNA binding  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  mitochondrial inner membrane  mitochondrial large ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL54
Atlas of Cancer Signalling NetworkMRPL54
Wikipedia pathwaysMRPL54
Orthology - Evolution
OrthoDB116541
GeneTree (enSembl)ENSG00000183617
Phylogenetic Trees/Animal Genes : TreeFamMRPL54
HOVERGENQ6P161
HOGENOMQ6P161
Homologs : HomoloGeneMRPL54
Homology/Alignments : Family Browser (UCSC)MRPL54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL54
dbVarMRPL54
ClinVarMRPL54
1000_GenomesMRPL54 
Exome Variant ServerMRPL54
ExAC (Exome Aggregation Consortium)MRPL54 (select the gene name)
Genetic variants : HAPMAP116541
Genomic Variants (DGV)MRPL54 [DGVbeta]
DECIPHERMRPL54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL54 
Mutations
ICGC Data PortalMRPL54 
TCGA Data PortalMRPL54 
Broad Tumor PortalMRPL54
OASIS PortalMRPL54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL54
DgiDB (Drug Gene Interaction Database)MRPL54
DoCM (Curated mutations)MRPL54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL54 (select a term)
intoGenMRPL54
Cancer3DMRPL54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611858   
Orphanet
MedgenMRPL54
Genetic Testing Registry MRPL54
NextProtQ6P161 [Medical]
TSGene116541
GENETestsMRPL54
Target ValidationMRPL54
Huge Navigator MRPL54 [HugePedia]
snp3D : Map Gene to Disease116541
BioCentury BCIQMRPL54
ClinGenMRPL54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116541
Chemical/Pharm GKB GenePA30987
Clinical trialMRPL54
Miscellaneous
canSAR (ICR)MRPL54 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL54
EVEXMRPL54
GoPubMedMRPL54
iHOPMRPL54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:32 CEST 2017

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