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MRPL55 (mitochondrial ribosomal protein L55)

Identity

Other aliasAAVG5835
L55nt
MRP-L55
PRO19675
HGNC (Hugo) MRPL55
LocusID (NCBI) 128308
Atlas_Id 70469
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228106679 and ends at 228109312 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC25A39 (17q21.31) / MRPL55 (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL55   16686
Cards
Entrez_Gene (NCBI)MRPL55  128308  mitochondrial ribosomal protein L55
AliasesAAVG5835; L55nt; MRP-L55; PRO19675
GeneCards (Weizmann)MRPL55
Ensembl hg19 (Hinxton)ENSG00000162910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162910 [Gene_View]  chr1:228106679-228109312 [Contig_View]  MRPL55 [Vega]
ICGC DataPortalENSG00000162910
TCGA cBioPortalMRPL55
AceView (NCBI)MRPL55
Genatlas (Paris)MRPL55
WikiGenes128308
SOURCE (Princeton)MRPL55
Genetics Home Reference (NIH)MRPL55
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL55  -     chr1:228106679-228109312 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL55  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblMRPL55 - 1q42.13 [CytoView hg19]  MRPL55 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIMRPL55 [Mapview hg19]  MRPL55 [Mapview hg38]
OMIM611859   
Gene and transcription
Genbank (Entrez)AA479904 AI301403 AK056987 AY358771 BC052806
RefSeq transcript (Entrez)NM_001321284 NM_181441 NM_181454 NM_181455 NM_181456 NM_181462 NM_181463 NM_181464 NM_181465
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL55
Cluster EST : UnigeneHs.63236 [ NCBI ]
CGAP (NCI)Hs.63236
Alternative Splicing GalleryENSG00000162910
Gene ExpressionMRPL55 [ NCBI-GEO ]   MRPL55 [ EBI - ARRAY_EXPRESS ]   MRPL55 [ SEEK ]   MRPL55 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128308
GTEX Portal (Tissue expression)MRPL55
Human Protein AtlasENSG00000162910-MRPL55 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7F7
Splice isoforms : SwissVarQ7Z7F7
PhosPhoSitePlusQ7Z7F7
Domains : Interpro (EBI)Ribosomal_L55_mit   
Domain families : Pfam (Sanger)Mitoc_L55 (PF09776)   
Domain families : Pfam (NCBI)pfam09776   
Conserved Domain (NCBI)MRPL55
DMDM Disease mutations128308
Blocks (Seattle)MRPL55
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyQ7Z7F7
Human Protein Atlas [tissue]ENSG00000162910-MRPL55 [tissue]
Peptide AtlasQ7Z7F7
HPRD14773
IPIIPI00640399   IPI00419626   IPI00644704   IPI00472663   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7F7
IntAct (EBI)Q7Z7F7
FunCoupENSG00000162910
BioGRIDMRPL55
STRING (EMBL)MRPL55
ZODIACMRPL55
Ontologies - Pathways
QuickGOQ7Z7F7
Ontology : AmiGOstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial large ribosomal subunit  translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial large ribosomal subunit  translation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL55
Atlas of Cancer Signalling NetworkMRPL55
Wikipedia pathwaysMRPL55
Orthology - Evolution
OrthoDB128308
GeneTree (enSembl)ENSG00000162910
Phylogenetic Trees/Animal Genes : TreeFamMRPL55
HOVERGENQ7Z7F7
HOGENOMQ7Z7F7
Homologs : HomoloGeneMRPL55
Homology/Alignments : Family Browser (UCSC)MRPL55
Gene fusions - Rearrangements
Tumor Fusion PortalMRPL55
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL55
dbVarMRPL55
ClinVarMRPL55
1000_GenomesMRPL55 
Exome Variant ServerMRPL55
ExAC (Exome Aggregation Consortium)ENSG00000162910
GNOMAD BrowserENSG00000162910
Genetic variants : HAPMAP128308
Genomic Variants (DGV)MRPL55 [DGVbeta]
DECIPHERMRPL55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL55 
Mutations
ICGC Data PortalMRPL55 
TCGA Data PortalMRPL55 
Broad Tumor PortalMRPL55
OASIS PortalMRPL55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL55
DgiDB (Drug Gene Interaction Database)MRPL55
DoCM (Curated mutations)MRPL55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL55 (select a term)
intoGenMRPL55
Cancer3DMRPL55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611859   
Orphanet
DisGeNETMRPL55
MedgenMRPL55
Genetic Testing Registry MRPL55
NextProtQ7Z7F7 [Medical]
TSGene128308
GENETestsMRPL55
Target ValidationMRPL55
Huge Navigator MRPL55 [HugePedia]
snp3D : Map Gene to Disease128308
BioCentury BCIQMRPL55
ClinGenMRPL55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128308
Chemical/Pharm GKB GenePA30988
Clinical trialMRPL55
Miscellaneous
canSAR (ICR)MRPL55 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL55
EVEXMRPL55
GoPubMedMRPL55
iHOPMRPL55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:01:52 CET 2017

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