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MRPL57 (mitochondrial ribosomal protein L57)

Identity

Alias_namesMRP63
mitochondrial ribosomal protein 63
Other aliasbMRP63
HGNC (Hugo) MRPL57
LocusID (NCBI) 78988
Atlas_Id 70470
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 21176233 and ends at 21179081 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPL57 (13q12.11) / RPL13 (16q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL57   14514
Cards
Entrez_Gene (NCBI)MRPL57  78988  mitochondrial ribosomal protein L57
AliasesMRP63; bMRP63
GeneCards (Weizmann)MRPL57
Ensembl hg19 (Hinxton)ENSG00000173141 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173141 [Gene_View]  chr13:21176233-21179081 [Contig_View]  MRPL57 [Vega]
ICGC DataPortalENSG00000173141
TCGA cBioPortalMRPL57
AceView (NCBI)MRPL57
Genatlas (Paris)MRPL57
WikiGenes78988
SOURCE (Princeton)MRPL57
Genetics Home Reference (NIH)MRPL57
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL57  -     chr13:21176233-21179081 +  13q12.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL57  -     13q12.11   [Description]    (hg19-Feb_2009)
EnsemblMRPL57 - 13q12.11 [CytoView hg19]  MRPL57 - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBIMRPL57 [Mapview hg19]  MRPL57 [Mapview hg38]
OMIM611997   
Gene and transcription
Genbank (Entrez)AB049957 AW445203 BC000002 BC023616 BC068492
RefSeq transcript (Entrez)NM_024026
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPL57
Cluster EST : UnigeneHs.458367 [ NCBI ]
CGAP (NCI)Hs.458367
Alternative Splicing GalleryENSG00000173141
Gene ExpressionMRPL57 [ NCBI-GEO ]   MRPL57 [ EBI - ARRAY_EXPRESS ]   MRPL57 [ SEEK ]   MRPL57 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)78988
GTEX Portal (Tissue expression)MRPL57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQC6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQC6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQC6
Splice isoforms : SwissVarQ9BQC6
PhosPhoSitePlusQ9BQC6
Domains : Interpro (EBI)Ribosomal_MRP63_mit   
Domain families : Pfam (Sanger)MRP-63 (PF14978)   
Domain families : Pfam (NCBI)pfam14978   
Conserved Domain (NCBI)MRPL57
DMDM Disease mutations78988
Blocks (Seattle)MRPL57
PDB (SRS)3J7Y    3J9M   
PDB (PDBSum)3J7Y    3J9M   
PDB (IMB)3J7Y    3J9M   
PDB (RSDB)3J7Y    3J9M   
Structural Biology KnowledgeBase3J7Y    3J9M   
SCOP (Structural Classification of Proteins)3J7Y    3J9M   
CATH (Classification of proteins structures)3J7Y    3J9M   
SuperfamilyQ9BQC6
Human Protein AtlasENSG00000173141
Peptide AtlasQ9BQC6
HPRD14736
IPIIPI00031485   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQC6
IntAct (EBI)Q9BQC6
FunCoupENSG00000173141
BioGRIDMRPL57
STRING (EMBL)MRPL57
ZODIACMRPL57
Ontologies - Pathways
QuickGOQ9BQC6
Ontology : AmiGOstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL57
Atlas of Cancer Signalling NetworkMRPL57
Wikipedia pathwaysMRPL57
Orthology - Evolution
OrthoDB78988
GeneTree (enSembl)ENSG00000173141
Phylogenetic Trees/Animal Genes : TreeFamMRPL57
HOVERGENQ9BQC6
HOGENOMQ9BQC6
Homologs : HomoloGeneMRPL57
Homology/Alignments : Family Browser (UCSC)MRPL57
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL57
dbVarMRPL57
ClinVarMRPL57
1000_GenomesMRPL57 
Exome Variant ServerMRPL57
ExAC (Exome Aggregation Consortium)MRPL57 (select the gene name)
Genetic variants : HAPMAP78988
Genomic Variants (DGV)MRPL57 [DGVbeta]
DECIPHERMRPL57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL57 
Mutations
ICGC Data PortalMRPL57 
TCGA Data PortalMRPL57 
Broad Tumor PortalMRPL57
OASIS PortalMRPL57 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMRPL57
BioMutasearch MRPL57
DgiDB (Drug Gene Interaction Database)MRPL57
DoCM (Curated mutations)MRPL57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL57 (select a term)
intoGenMRPL57
Cancer3DMRPL57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611997   
Orphanet
MedgenMRPL57
Genetic Testing Registry MRPL57
NextProtQ9BQC6 [Medical]
TSGene78988
GENETestsMRPL57
Target ValidationMRPL57
Huge Navigator MRPL57 [HugePedia]
snp3D : Map Gene to Disease78988
BioCentury BCIQMRPL57
ClinGenMRPL57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD78988
Chemical/Pharm GKB GenePA30937
Clinical trialMRPL57
Miscellaneous
canSAR (ICR)MRPL57 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL57
EVEXMRPL57
GoPubMedMRPL57
iHOPMRPL57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:33 CEST 2017

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