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MRPL9 (mitochondrial ribosomal protein L9)

Identity

Alias (NCBI)L9mt
HGNC (Hugo) MRPL9
LocusID (NCBI) 65005
Atlas_Id 70471
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151759647 and ends at 151763496 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANXA9 (1q21.3) / MRPL9 (1q21.3)ELP4 (11p13) / MRPL9 (1q21.3)MRPL9 (1q21.3) / NCAM1 (11q23.2)
MRPL9 (1q21.3) / RPS6KA2 (6q27)NKIRAS1 (3p24.2) / MRPL9 (1q21.3)STRN (2p22.2) / MRPL9 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MRPL9   14277
Cards
Entrez_Gene (NCBI)MRPL9    mitochondrial ribosomal protein L9
AliasesL9mt
GeneCards (Weizmann)MRPL9
Ensembl hg19 (Hinxton)ENSG00000143436 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143436 [Gene_View]  ENSG00000143436 [Sequence]  chr1:151759647-151763496 [Contig_View]  MRPL9 [Vega]
ICGC DataPortalENSG00000143436
TCGA cBioPortalMRPL9
AceView (NCBI)MRPL9
Genatlas (Paris)MRPL9
SOURCE (Princeton)MRPL9
Genetics Home Reference (NIH)MRPL9
Genomic and cartography
GoldenPath hg38 (UCSC)MRPL9  -     chr1:151759647-151763496 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPL9  -     1q21.3   [Description]    (hg19-Feb_2009)
GoldenPathMRPL9 - 1q21.3 [CytoView hg19]  MRPL9 - 1q21.3 [CytoView hg38]
ImmunoBaseENSG00000143436
Genome Data Viewer NCBIMRPL9 [Mapview hg19]  
OMIM611824   
Gene and transcription
Genbank (Entrez)AB049636 AK026363 AK293401 AK300668 AK309841
RefSeq transcript (Entrez)NM_001300733 NM_031420
Consensus coding sequences : CCDS (NCBI)MRPL9
Gene ExpressionMRPL9 [ NCBI-GEO ]   MRPL9 [ EBI - ARRAY_EXPRESS ]   MRPL9 [ SEEK ]   MRPL9 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL9 [ Firebrowse - Broad ]
GenevisibleExpression of MRPL9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65005
GTEX Portal (Tissue expression)MRPL9
Human Protein AtlasENSG00000143436-MRPL9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYD2
PhosPhoSitePlusQ9BYD2
Domains : Interpro (EBI)Ribosomal_L9    Ribosomal_L9/RNase_H1_N    Ribosomal_L9_N    Ribosomal_L9_N_sf   
Domain families : Pfam (Sanger)Ribosomal_L9_N (PF01281)   
Domain families : Pfam (NCBI)pfam01281   
Conserved Domain (NCBI)MRPL9
PDB (RSDB)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB Europe3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (PDBSum)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (IMB)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
Structural Biology KnowledgeBase3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SCOP (Structural Classification of Proteins)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
CATH (Classification of proteins structures)3J7Y    3J9M    5OOL    5OOM    6I9R    6NU2    6NU3    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SuperfamilyQ9BYD2
AlphaFold pdb e-kbQ9BYD2   
Human Protein Atlas [tissue]ENSG00000143436-MRPL9 [tissue]
HPRD14774
Protein Interaction databases
DIP (DOE-UCLA)Q9BYD2
IntAct (EBI)Q9BYD2
BioGRIDMRPL9
STRING (EMBL)MRPL9
ZODIACMRPL9
Ontologies - Pathways
QuickGOQ9BYD2
Ontology : AmiGORNA binding  structural constituent of ribosome  protein binding  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial large ribosomal subunit  translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  protein binding  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial large ribosomal subunit  translation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPL9
Atlas of Cancer Signalling NetworkMRPL9
Wikipedia pathwaysMRPL9
Orthology - Evolution
OrthoDB65005
GeneTree (enSembl)ENSG00000143436
Phylogenetic Trees/Animal Genes : TreeFamMRPL9
Homologs : HomoloGeneMRPL9
Homology/Alignments : Family Browser (UCSC)MRPL9
Gene fusions - Rearrangements
Fusion : QuiverMRPL9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL9
dbVarMRPL9
ClinVarMRPL9
MonarchMRPL9
1000_GenomesMRPL9 
Exome Variant ServerMRPL9
GNOMAD BrowserENSG00000143436
Varsome BrowserMRPL9
ACMGMRPL9 variants
VarityQ9BYD2
Genomic Variants (DGV)MRPL9 [DGVbeta]
DECIPHERMRPL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPL9 
Mutations
ICGC Data PortalMRPL9 
TCGA Data PortalMRPL9 
Broad Tumor PortalMRPL9
OASIS PortalMRPL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMRPL9
Mutations and Diseases : HGMDMRPL9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMRPL9
DgiDB (Drug Gene Interaction Database)MRPL9
DoCM (Curated mutations)MRPL9
CIViC (Clinical Interpretations of Variants in Cancer)MRPL9
Cancer3DMRPL9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611824   
Orphanet
DisGeNETMRPL9
MedgenMRPL9
Genetic Testing Registry MRPL9
NextProtQ9BYD2 [Medical]
GENETestsMRPL9
Target ValidationMRPL9
Huge Navigator MRPL9 [HugePedia]
ClinGenMRPL9
Clinical trials, drugs, therapy
MyCancerGenomeMRPL9
Protein Interactions : CTDMRPL9
Pharm GKB GenePA30991
PharosQ9BYD2
Clinical trialMRPL9
Miscellaneous
canSAR (ICR)MRPL9
HarmonizomeMRPL9
DataMed IndexMRPL9
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMRPL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:11:44 CEST 2021

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