Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRPL9 (mitochondrial ribosomal protein L9)

Identity

Other aliasL9mt
HGNC (Hugo) MRPL9
LocusID (NCBI) 65005
Atlas_Id 70471
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151732119 and ends at 151736392 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANXA9 (1q21.3) / MRPL9 (1q21.3)ELP4 (11p13) / MRPL9 (1q21.3)MRPL9 (1q21.3) / NCAM1 (11q23.2)
MRPL9 (1q21.3) / RPS6KA2 (6q27)NKIRAS1 (3p24.2) / MRPL9 (1q21.3)STRN (2p22.2) / MRPL9 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPL9   14277
Cards
Entrez_Gene (NCBI)MRPL9  65005  mitochondrial ribosomal protein L9
AliasesL9mt
GeneCards (Weizmann)MRPL9
Ensembl hg19 (Hinxton) [Gene_View]  chr1:151732119-151736392 [Contig_View]  MRPL9 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:151732119-151736392 [Contig_View]  MRPL9 [Vega]
TCGA cBioPortalMRPL9
AceView (NCBI)MRPL9
Genatlas (Paris)MRPL9
WikiGenes65005
SOURCE (Princeton)MRPL9
Genetics Home Reference (NIH)MRPL9
Genomic and cartography
GoldenPath hg19 (UCSC)MRPL9  -     chr1:151732119-151736392 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPL9  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblMRPL9 - 1q21.3 [CytoView hg19]  MRPL9 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIMRPL9 [Mapview hg19]  MRPL9 [Mapview hg38]
OMIM611824   
Gene and transcription
Genbank (Entrez)AB049636 AK026363 AK293401 AK300668 AK309841
RefSeq transcript (Entrez)NM_001300733 NM_031420
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)MRPL9
Cluster EST : UnigeneHs.288936 [ NCBI ]
CGAP (NCI)Hs.288936
Gene ExpressionMRPL9 [ NCBI-GEO ]   MRPL9 [ EBI - ARRAY_EXPRESS ]   MRPL9 [ SEEK ]   MRPL9 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65005
GTEX Portal (Tissue expression)MRPL9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYD2
Splice isoforms : SwissVarQ9BYD2
PhosPhoSitePlusQ9BYD2
Domains : Interpro (EBI)Ribosomal_L9    Ribosomal_L9/RNase_H1_N    Ribosomal_L9_N   
Domain families : Pfam (Sanger)Ribosomal_L9_N (PF01281)   
Domain families : Pfam (NCBI)pfam01281   
Conserved Domain (NCBI)MRPL9
DMDM Disease mutations65005
Blocks (Seattle)MRPL9
PDB (SRS)3J7Y   
PDB (PDBSum)3J7Y   
PDB (IMB)3J7Y   
PDB (RSDB)3J7Y   
Structural Biology KnowledgeBase3J7Y   
SCOP (Structural Classification of Proteins)3J7Y   
CATH (Classification of proteins structures)3J7Y   
SuperfamilyQ9BYD2
Peptide AtlasQ9BYD2
HPRD14774
IPIIPI00307409   IPI00909111   IPI00909587   IPI00514545   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYD2
IntAct (EBI)Q9BYD2
BioGRIDMRPL9
STRING (EMBL)MRPL9
ZODIACMRPL9
Ontologies - Pathways
QuickGOQ9BYD2
Ontology : AmiGOstructural constituent of ribosome  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  translation  translation  organelle organization  mitochondrial translation  poly(A) RNA binding  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  translation  translation  organelle organization  mitochondrial translation  poly(A) RNA binding  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPL9
Atlas of Cancer Signalling NetworkMRPL9
Wikipedia pathwaysMRPL9
Orthology - Evolution
OrthoDB65005
Phylogenetic Trees/Animal Genes : TreeFamMRPL9
HOVERGENQ9BYD2
HOGENOMQ9BYD2
Homologs : HomoloGeneMRPL9
Homology/Alignments : Family Browser (UCSC)MRPL9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPL9
dbVarMRPL9
ClinVarMRPL9
1000_GenomesMRPL9 
Exome Variant ServerMRPL9
ExAC (Exome Aggregation Consortium)MRPL9 (select the gene name)
Genetic variants : HAPMAP65005
Genomic Variants (DGV)MRPL9 [DGVbeta]
DECIPHER (Syndromes)1:151732119-151736392  
CONAN: Copy Number AnalysisMRPL9 
Mutations
ICGC Data PortalMRPL9 
TCGA Data PortalMRPL9 
Broad Tumor PortalMRPL9
OASIS PortalMRPL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPL9
DgiDB (Drug Gene Interaction Database)MRPL9
DoCM (Curated mutations)MRPL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPL9 (select a term)
intoGenMRPL9
Cancer3DMRPL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611824   
Orphanet
MedgenMRPL9
Genetic Testing Registry MRPL9
NextProtQ9BYD2 [Medical]
TSGene65005
GENETestsMRPL9
Huge Navigator MRPL9 [HugePedia]
snp3D : Map Gene to Disease65005
BioCentury BCIQMRPL9
ClinGenMRPL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65005
Chemical/Pharm GKB GenePA30991
Clinical trialMRPL9
Miscellaneous
canSAR (ICR)MRPL9 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPL9
EVEXMRPL9
GoPubMedMRPL9
iHOPMRPL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:33:47 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.