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MRPS11 (mitochondrial ribosomal protein S11)

Identity

Alias_symbol (synonym)FLJ23406
HCC-2
FLJ22512
Other aliasMRP-S11
S11mt
HGNC (Hugo) MRPS11
LocusID (NCBI) 64963
Atlas_Id 70472
Location 15q25.3  [Link to chromosome band 15q25]
Location_base_pair Starts at 88467453 and ends at 88480767 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS11   14050
Cards
Entrez_Gene (NCBI)MRPS11  64963  mitochondrial ribosomal protein S11
AliasesHCC-2; MRP-S11; S11mt
GeneCards (Weizmann)MRPS11
Ensembl hg19 (Hinxton)ENSG00000181991 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181991 [Gene_View]  chr15:88467453-88480767 [Contig_View]  MRPS11 [Vega]
ICGC DataPortalENSG00000181991
TCGA cBioPortalMRPS11
AceView (NCBI)MRPS11
Genatlas (Paris)MRPS11
WikiGenes64963
SOURCE (Princeton)MRPS11
Genetics Home Reference (NIH)MRPS11
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS11  -     chr15:88467453-88480767 +  15q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS11  -     15q25.3   [Description]    (hg19-Feb_2009)
EnsemblMRPS11 - 15q25.3 [CytoView hg19]  MRPS11 - 15q25.3 [CytoView hg38]
Mapping of homologs : NCBIMRPS11 [Mapview hg19]  MRPS11 [Mapview hg38]
OMIM611977   
Gene and transcription
Genbank (Entrez)AB049944 AK026165 AK027059 AK222933 AK223152
RefSeq transcript (Entrez)NM_001321970 NM_001321972 NM_001321973 NM_001321974 NM_001321976 NM_022839 NM_176805
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS11
Cluster EST : UnigeneHs.111286 [ NCBI ]
CGAP (NCI)Hs.111286
Alternative Splicing GalleryENSG00000181991
Gene ExpressionMRPS11 [ NCBI-GEO ]   MRPS11 [ EBI - ARRAY_EXPRESS ]   MRPS11 [ SEEK ]   MRPS11 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64963
GTEX Portal (Tissue expression)MRPS11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82912   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82912  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82912
Splice isoforms : SwissVarP82912
PhosPhoSitePlusP82912
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S11 (PS00054)   
Domains : Interpro (EBI)Ribosomal_S11    Ribosomal_S11_CS   
Domain families : Pfam (Sanger)Ribosomal_S11 (PF00411)   
Domain families : Pfam (NCBI)pfam00411   
Conserved Domain (NCBI)MRPS11
DMDM Disease mutations64963
Blocks (Seattle)MRPS11
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyP82912
Human Protein AtlasENSG00000181991
Peptide AtlasP82912
HPRD14776
IPIIPI00010244   IPI00219350   IPI00219351   
Protein Interaction databases
DIP (DOE-UCLA)P82912
IntAct (EBI)P82912
FunCoupENSG00000181991
BioGRIDMRPS11
STRING (EMBL)MRPS11
ZODIACMRPS11
Ontologies - Pathways
QuickGOP82912
Ontology : AmiGOribosomal small subunit assembly  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  structural constituent of ribosome  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  mitochondrial translation  DNA damage response, detection of DNA damage  mRNA 5'-UTR binding  mitochondrial translational elongation  mitochondrial translational termination  small ribosomal subunit rRNA binding  
Ontology : EGO-EBIribosomal small subunit assembly  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  structural constituent of ribosome  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  mitochondrial translation  DNA damage response, detection of DNA damage  mRNA 5'-UTR binding  mitochondrial translational elongation  mitochondrial translational termination  small ribosomal subunit rRNA binding  
Pathways : KEGGRibosome   
NDEx NetworkMRPS11
Atlas of Cancer Signalling NetworkMRPS11
Wikipedia pathwaysMRPS11
Orthology - Evolution
OrthoDB64963
GeneTree (enSembl)ENSG00000181991
Phylogenetic Trees/Animal Genes : TreeFamMRPS11
HOVERGENP82912
HOGENOMP82912
Homologs : HomoloGeneMRPS11
Homology/Alignments : Family Browser (UCSC)MRPS11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS11
dbVarMRPS11
ClinVarMRPS11
1000_GenomesMRPS11 
Exome Variant ServerMRPS11
ExAC (Exome Aggregation Consortium)MRPS11 (select the gene name)
Genetic variants : HAPMAP64963
Genomic Variants (DGV)MRPS11 [DGVbeta]
DECIPHERMRPS11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS11 
Mutations
ICGC Data PortalMRPS11 
TCGA Data PortalMRPS11 
Broad Tumor PortalMRPS11
OASIS PortalMRPS11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS11
DgiDB (Drug Gene Interaction Database)MRPS11
DoCM (Curated mutations)MRPS11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS11 (select a term)
intoGenMRPS11
Cancer3DMRPS11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611977   
Orphanet
MedgenMRPS11
Genetic Testing Registry MRPS11
NextProtP82912 [Medical]
TSGene64963
GENETestsMRPS11
Target ValidationMRPS11
Huge Navigator MRPS11 [HugePedia]
snp3D : Map Gene to Disease64963
BioCentury BCIQMRPS11
ClinGenMRPS11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64963
Chemical/Pharm GKB GenePA30994
Clinical trialMRPS11
Miscellaneous
canSAR (ICR)MRPS11 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS11
EVEXMRPS11
GoPubMedMRPS11
iHOPMRPS11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:15 CEST 2017

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