Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MRPS12 (mitochondrial ribosomal protein S12)

Identity

Alias_namesRPMS12
Alias_symbol (synonym)RPS12
RPSM12
Other aliasMPR-S12
MT-RPS12
HGNC (Hugo) MRPS12
LocusID (NCBI) 6183
Atlas_Id 50700
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38930954 and ends at 38933019 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS12   10380
Cards
Entrez_Gene (NCBI)MRPS12  6183  mitochondrial ribosomal protein S12
AliasesMPR-S12; MT-RPS12; RPMS12; RPS12; 
RPSM12
GeneCards (Weizmann)MRPS12
Ensembl hg19 (Hinxton)ENSG00000128626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128626 [Gene_View]  chr19:38930954-38933019 [Contig_View]  MRPS12 [Vega]
ICGC DataPortalENSG00000128626
TCGA cBioPortalMRPS12
AceView (NCBI)MRPS12
Genatlas (Paris)MRPS12
WikiGenes6183
SOURCE (Princeton)MRPS12
Genetics Home Reference (NIH)MRPS12
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS12  -     chr19:38930954-38933019 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS12  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblMRPS12 - 19q13.2 [CytoView hg19]  MRPS12 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIMRPS12 [Mapview hg19]  MRPS12 [Mapview hg38]
OMIM603021   
Gene and transcription
Genbank (Entrez)AI168197 BC001617 BC006424 BC007499 CR407609
RefSeq transcript (Entrez)NM_021107 NM_033362 NM_033363
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS12
Cluster EST : UnigeneHs.411125 [ NCBI ]
CGAP (NCI)Hs.411125
Alternative Splicing GalleryENSG00000128626
Gene ExpressionMRPS12 [ NCBI-GEO ]   MRPS12 [ EBI - ARRAY_EXPRESS ]   MRPS12 [ SEEK ]   MRPS12 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6183
GTEX Portal (Tissue expression)MRPS12
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15235   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15235  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15235
Splice isoforms : SwissVarO15235
PhosPhoSitePlusO15235
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S12 (PS00055)   
Domains : Interpro (EBI)NA-bd_OB-fold    Ribosomal_S12/S23    Ribosomal_S12_bac   
Domain families : Pfam (Sanger)Ribosom_S12_S23 (PF00164)   
Domain families : Pfam (NCBI)pfam00164   
Conserved Domain (NCBI)MRPS12
DMDM Disease mutations6183
Blocks (Seattle)MRPS12
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyO15235
Human Protein AtlasENSG00000128626
Peptide AtlasO15235
HPRD04316
IPIIPI00005692   
Protein Interaction databases
DIP (DOE-UCLA)O15235
IntAct (EBI)O15235
FunCoupENSG00000128626
BioGRIDMRPS12
STRING (EMBL)MRPS12
ZODIACMRPS12
Ontologies - Pathways
QuickGOO15235
Ontology : AmiGORNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPS12
Atlas of Cancer Signalling NetworkMRPS12
Wikipedia pathwaysMRPS12
Orthology - Evolution
OrthoDB6183
GeneTree (enSembl)ENSG00000128626
Phylogenetic Trees/Animal Genes : TreeFamMRPS12
HOVERGENO15235
HOGENOMO15235
Homologs : HomoloGeneMRPS12
Homology/Alignments : Family Browser (UCSC)MRPS12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS12
dbVarMRPS12
ClinVarMRPS12
1000_GenomesMRPS12 
Exome Variant ServerMRPS12
ExAC (Exome Aggregation Consortium)MRPS12 (select the gene name)
Genetic variants : HAPMAP6183
Genomic Variants (DGV)MRPS12 [DGVbeta]
DECIPHERMRPS12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS12 
Mutations
ICGC Data PortalMRPS12 
TCGA Data PortalMRPS12 
Broad Tumor PortalMRPS12
OASIS PortalMRPS12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS12
DgiDB (Drug Gene Interaction Database)MRPS12
DoCM (Curated mutations)MRPS12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS12 (select a term)
intoGenMRPS12
Cancer3DMRPS12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603021   
Orphanet
MedgenMRPS12
Genetic Testing Registry MRPS12
NextProtO15235 [Medical]
TSGene6183
GENETestsMRPS12
Target ValidationMRPS12
Huge Navigator MRPS12 [HugePedia]
snp3D : Map Gene to Disease6183
BioCentury BCIQMRPS12
ClinGenMRPS12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6183
Chemical/Pharm GKB GenePA30996
Clinical trialMRPS12
Miscellaneous
canSAR (ICR)MRPS12 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS12
EVEXMRPS12
GoPubMedMRPS12
iHOPMRPS12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:45:22 CEST 2017

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