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MRPS15 (mitochondrial ribosomal protein S15)

Identity

Alias_symbol (synonym)FLJ11564
Other aliasDC37
MPR-S15
RPMS15
S15mt
HGNC (Hugo) MRPS15
LocusID (NCBI) 64960
Atlas_Id 70474
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36455761 and ends at 36464439 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALDH7A1 (5q23.2) / MRPS15 (1p34.3)MRPS15 (1p34.3) / SF3B2 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS15   14504
Cards
Entrez_Gene (NCBI)MRPS15  64960  mitochondrial ribosomal protein S15
AliasesDC37; MPR-S15; RPMS15; S15mt
GeneCards (Weizmann)MRPS15
Ensembl hg19 (Hinxton)ENSG00000116898 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116898 [Gene_View]  chr1:36455761-36464439 [Contig_View]  MRPS15 [Vega]
ICGC DataPortalENSG00000116898
TCGA cBioPortalMRPS15
AceView (NCBI)MRPS15
Genatlas (Paris)MRPS15
WikiGenes64960
SOURCE (Princeton)MRPS15
Genetics Home Reference (NIH)MRPS15
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS15  -     chr1:36455761-36464439 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS15  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblMRPS15 - 1p34.3 [CytoView hg19]  MRPS15 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIMRPS15 [Mapview hg19]  MRPS15 [Mapview hg38]
OMIM611979   
Gene and transcription
Genbank (Entrez)AB049946 AB209905 AF265439 AK021626 AK125230
RefSeq transcript (Entrez)NM_031280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS15
Cluster EST : UnigeneHs.352839 [ NCBI ]
CGAP (NCI)Hs.352839
Alternative Splicing GalleryENSG00000116898
Gene ExpressionMRPS15 [ NCBI-GEO ]   MRPS15 [ EBI - ARRAY_EXPRESS ]   MRPS15 [ SEEK ]   MRPS15 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64960
GTEX Portal (Tissue expression)MRPS15
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82914   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82914  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82914
Splice isoforms : SwissVarP82914
PhosPhoSitePlusP82914
Domains : Interpro (EBI)Ribosomal_S15    Ribosomal_S15_bac-type    S15_NS1_RNA-bd   
Domain families : Pfam (Sanger)Ribosomal_S15 (PF00312)   
Domain families : Pfam (NCBI)pfam00312   
Domain families : Smart (EMBL)Ribosomal_S15 (SM01387)  
Conserved Domain (NCBI)MRPS15
DMDM Disease mutations64960
Blocks (Seattle)MRPS15
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyP82914
Human Protein AtlasENSG00000116898
Peptide AtlasP82914
HPRD11372
IPIIPI00550037   IPI00555996   
Protein Interaction databases
DIP (DOE-UCLA)P82914
IntAct (EBI)P82914
FunCoupENSG00000116898
BioGRIDMRPS15
STRING (EMBL)MRPS15
ZODIACMRPS15
Ontologies - Pathways
QuickGOP82914
Ontology : AmiGORNA binding  structural constituent of ribosome  structural constituent of ribosome  nucleus  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  translation  mitochondrial translation  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  structural constituent of ribosome  nucleus  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  translation  mitochondrial translation  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPS15
Atlas of Cancer Signalling NetworkMRPS15
Wikipedia pathwaysMRPS15
Orthology - Evolution
OrthoDB64960
GeneTree (enSembl)ENSG00000116898
Phylogenetic Trees/Animal Genes : TreeFamMRPS15
HOVERGENP82914
HOGENOMP82914
Homologs : HomoloGeneMRPS15
Homology/Alignments : Family Browser (UCSC)MRPS15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS15
dbVarMRPS15
ClinVarMRPS15
1000_GenomesMRPS15 
Exome Variant ServerMRPS15
ExAC (Exome Aggregation Consortium)MRPS15 (select the gene name)
Genetic variants : HAPMAP64960
Genomic Variants (DGV)MRPS15 [DGVbeta]
DECIPHERMRPS15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS15 
Mutations
ICGC Data PortalMRPS15 
TCGA Data PortalMRPS15 
Broad Tumor PortalMRPS15
OASIS PortalMRPS15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS15
DgiDB (Drug Gene Interaction Database)MRPS15
DoCM (Curated mutations)MRPS15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS15 (select a term)
intoGenMRPS15
Cancer3DMRPS15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611979   
Orphanet
MedgenMRPS15
Genetic Testing Registry MRPS15
NextProtP82914 [Medical]
TSGene64960
GENETestsMRPS15
Target ValidationMRPS15
Huge Navigator MRPS15 [HugePedia]
snp3D : Map Gene to Disease64960
BioCentury BCIQMRPS15
ClinGenMRPS15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64960
Chemical/Pharm GKB GenePA30999
Clinical trialMRPS15
Miscellaneous
canSAR (ICR)MRPS15 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS15
EVEXMRPS15
GoPubMedMRPS15
iHOPMRPS15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:34 CEST 2017

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