Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MRPS16 (mitochondrial ribosomal protein S16)

Identity

Alias_symbol (synonym)CGI-132
Other aliasCOXPD2
MRP-S16
RPMS16
HGNC (Hugo) MRPS16
LocusID (NCBI) 51021
Atlas_Id 70475
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 75008601 and ends at 75012451 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MRPS16 (10q22.2) / ADCY2 (5p15.31)MRPS16 (10q22.2) / CFAP70 (10q22.2)MRPS16 (10q22.2) / MRPS16 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS16   14048
Cards
Entrez_Gene (NCBI)MRPS16  51021  mitochondrial ribosomal protein S16
AliasesCGI-132; COXPD2; MRP-S16; RPMS16
GeneCards (Weizmann)MRPS16
Ensembl hg19 (Hinxton)ENSG00000182180 [Gene_View]  chr10:75008601-75012451 [Contig_View]  MRPS16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182180 [Gene_View]  chr10:75008601-75012451 [Contig_View]  MRPS16 [Vega]
ICGC DataPortalENSG00000182180
TCGA cBioPortalMRPS16
AceView (NCBI)MRPS16
Genatlas (Paris)MRPS16
WikiGenes51021
SOURCE (Princeton)MRPS16
Genetics Home Reference (NIH)MRPS16
Genomic and cartography
GoldenPath hg19 (UCSC)MRPS16  -     chr10:75008601-75012451 -  10q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPS16  -     10q22.2   [Description]    (hg38-Dec_2013)
EnsemblMRPS16 - 10q22.2 [CytoView hg19]  MRPS16 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIMRPS16 [Mapview hg19]  MRPS16 [Mapview hg38]
OMIM609204   610498   
Gene and transcription
Genbank (Entrez)AB049948 AF151890 AK025715 AK098291 BC021106
RefSeq transcript (Entrez)NM_016065
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_008096 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)MRPS16
Cluster EST : UnigeneHs.180312 [ NCBI ]
CGAP (NCI)Hs.180312
Alternative Splicing GalleryENSG00000182180
Gene ExpressionMRPS16 [ NCBI-GEO ]   MRPS16 [ EBI - ARRAY_EXPRESS ]   MRPS16 [ SEEK ]   MRPS16 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51021
GTEX Portal (Tissue expression)MRPS16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3D3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3D3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3D3
Splice isoforms : SwissVarQ9Y3D3
PhosPhoSitePlusQ9Y3D3
Domains : Interpro (EBI)Ribosomal_S16    Ribosomal_S16_dom   
Domain families : Pfam (Sanger)Ribosomal_S16 (PF00886)   
Domain families : Pfam (NCBI)pfam00886   
Conserved Domain (NCBI)MRPS16
DMDM Disease mutations51021
Blocks (Seattle)MRPS16
SuperfamilyQ9Y3D3
Human Protein AtlasENSG00000182180
Peptide AtlasQ9Y3D3
HPRD14778
IPIIPI00032872   IPI00909954   IPI00643459   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3D3
IntAct (EBI)Q9Y3D3
FunCoupENSG00000182180
BioGRIDMRPS16
STRING (EMBL)MRPS16
ZODIACMRPS16
Ontologies - Pathways
QuickGOQ9Y3D3
Ontology : AmiGOstructural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  translation  translation  organelle organization  mitochondrial translation  mitochondrial translation  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  translation  translation  organelle organization  mitochondrial translation  mitochondrial translation  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPS16
Atlas of Cancer Signalling NetworkMRPS16
Wikipedia pathwaysMRPS16
Orthology - Evolution
OrthoDB51021
GeneTree (enSembl)ENSG00000182180
Phylogenetic Trees/Animal Genes : TreeFamMRPS16
HOVERGENQ9Y3D3
HOGENOMQ9Y3D3
Homologs : HomoloGeneMRPS16
Homology/Alignments : Family Browser (UCSC)MRPS16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS16
dbVarMRPS16
ClinVarMRPS16
1000_GenomesMRPS16 
Exome Variant ServerMRPS16
ExAC (Exome Aggregation Consortium)MRPS16 (select the gene name)
Genetic variants : HAPMAP51021
Genomic Variants (DGV)MRPS16 [DGVbeta]
DECIPHER (Syndromes)10:75008601-75012451  ENSG00000182180
CONAN: Copy Number AnalysisMRPS16 
Mutations
ICGC Data PortalMRPS16 
TCGA Data PortalMRPS16 
Broad Tumor PortalMRPS16
OASIS PortalMRPS16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS16
DgiDB (Drug Gene Interaction Database)MRPS16
DoCM (Curated mutations)MRPS16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS16 (select a term)
intoGenMRPS16
Cancer3DMRPS16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609204    610498   
Orphanet19801   
MedgenMRPS16
Genetic Testing Registry MRPS16
NextProtQ9Y3D3 [Medical]
TSGene51021
GENETestsMRPS16
Huge Navigator MRPS16 [HugePedia]
snp3D : Map Gene to Disease51021
BioCentury BCIQMRPS16
ClinGenMRPS16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51021
Chemical/Pharm GKB GenePA31000
Clinical trialMRPS16
Miscellaneous
canSAR (ICR)MRPS16 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS16
EVEXMRPS16
GoPubMedMRPS16
iHOPMRPS16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:33:48 CET 2017

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