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MRPS16 (mitochondrial ribosomal protein S16)

Identity

Alias (NCBI)CGI-132
COXPD2
MRP-S16
RPMS16
HGNC (Hugo) MRPS16
HGNC Alias symbCGI-132
LocusID (NCBI) 51021
Atlas_Id 70475
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73248849 and ends at 73252644 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPS16 (10q22.2) / ADCY2 (5p15.31)MRPS16 (10q22.2) / CFAP70 (10q22.2)MRPS16 (10q22.2) / MRPS16 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MRPS16   14048
Cards
Entrez_Gene (NCBI)MRPS16    mitochondrial ribosomal protein S16
AliasesCGI-132; COXPD2; MRP-S16; RPMS16
GeneCards (Weizmann)MRPS16
Ensembl hg19 (Hinxton)ENSG00000182180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182180 [Gene_View]  ENSG00000182180 [Sequence]  chr10:73248849-73252644 [Contig_View]  MRPS16 [Vega]
ICGC DataPortalENSG00000182180
TCGA cBioPortalMRPS16
AceView (NCBI)MRPS16
Genatlas (Paris)MRPS16
SOURCE (Princeton)MRPS16
Genetics Home Reference (NIH)MRPS16
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS16  -     chr10:73248849-73252644 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS16  -     10q22.2   [Description]    (hg19-Feb_2009)
GoldenPathMRPS16 - 10q22.2 [CytoView hg19]  MRPS16 - 10q22.2 [CytoView hg38]
ImmunoBaseENSG00000182180
Genome Data Viewer NCBIMRPS16 [Mapview hg19]  
OMIM609204   610498   
Gene and transcription
Genbank (Entrez)AB049948 AF151890 AK025715 AK098291 BC021106
RefSeq transcript (Entrez)NM_016065
Consensus coding sequences : CCDS (NCBI)MRPS16
Gene ExpressionMRPS16 [ NCBI-GEO ]   MRPS16 [ EBI - ARRAY_EXPRESS ]   MRPS16 [ SEEK ]   MRPS16 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS16 [ Firebrowse - Broad ]
GenevisibleExpression of MRPS16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51021
GTEX Portal (Tissue expression)MRPS16
Human Protein AtlasENSG00000182180-MRPS16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3D3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3D3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3D3
PhosPhoSitePlusQ9Y3D3
Domains : Interpro (EBI)Ribosomal_S16    Ribosomal_S16_dom_sf   
Domain families : Pfam (Sanger)Ribosomal_S16 (PF00886)   
Domain families : Pfam (NCBI)pfam00886   
Conserved Domain (NCBI)MRPS16
PDB (RSDB)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB Europe3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (PDBSum)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (IMB)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
Structural Biology KnowledgeBase3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SCOP (Structural Classification of Proteins)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
CATH (Classification of proteins structures)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SuperfamilyQ9Y3D3
AlphaFold pdb e-kbQ9Y3D3   
Human Protein Atlas [tissue]ENSG00000182180-MRPS16 [tissue]
HPRD14778
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3D3
IntAct (EBI)Q9Y3D3
BioGRIDMRPS16
STRING (EMBL)MRPS16
ZODIACMRPS16
Ontologies - Pathways
QuickGOQ9Y3D3
Ontology : AmiGOstructural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  cytosol  translation  small ribosomal subunit  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  cytosol  translation  small ribosomal subunit  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS16
Atlas of Cancer Signalling NetworkMRPS16
Wikipedia pathwaysMRPS16
Orthology - Evolution
OrthoDB51021
GeneTree (enSembl)ENSG00000182180
Phylogenetic Trees/Animal Genes : TreeFamMRPS16
Homologs : HomoloGeneMRPS16
Homology/Alignments : Family Browser (UCSC)MRPS16
Gene fusions - Rearrangements
Fusion : QuiverMRPS16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS16
dbVarMRPS16
ClinVarMRPS16
MonarchMRPS16
1000_GenomesMRPS16 
Exome Variant ServerMRPS16
GNOMAD BrowserENSG00000182180
Varsome BrowserMRPS16
ACMGMRPS16 variants
VarityQ9Y3D3
Genomic Variants (DGV)MRPS16 [DGVbeta]
DECIPHERMRPS16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS16 
Mutations
ICGC Data PortalMRPS16 
TCGA Data PortalMRPS16 
Broad Tumor PortalMRPS16
OASIS PortalMRPS16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMRPS16
Mutations and Diseases : HGMDMRPS16
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMRPS16
DgiDB (Drug Gene Interaction Database)MRPS16
DoCM (Curated mutations)MRPS16
CIViC (Clinical Interpretations of Variants in Cancer)MRPS16
Cancer3DMRPS16
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609204    610498   
Orphanet19801   
DisGeNETMRPS16
MedgenMRPS16
Genetic Testing Registry MRPS16
NextProtQ9Y3D3 [Medical]
GENETestsMRPS16
Target ValidationMRPS16
Huge Navigator MRPS16 [HugePedia]
ClinGenMRPS16
Clinical trials, drugs, therapy
MyCancerGenomeMRPS16
Protein Interactions : CTDMRPS16
Pharm GKB GenePA31000
PharosQ9Y3D3
Clinical trialMRPS16
Miscellaneous
canSAR (ICR)MRPS16
HarmonizomeMRPS16
DataMed IndexMRPS16
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMRPS16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:11:45 CEST 2021

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