Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MRPS17 (mitochondrial ribosomal protein S17)

Identity

Alias_symbol (synonym)HSPC011
RPMS17
MRP-S17
Other aliasS17mt
HGNC (Hugo) MRPS17
LocusID (NCBI) 51373
Atlas_Id 70476
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 56019611 and ends at 56023033 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GAPDH (12p13.31) / MRPS17 (7p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS17   14047
Cards
Entrez_Gene (NCBI)MRPS17  51373  mitochondrial ribosomal protein S17
AliasesHSPC011; MRP-S17; RPMS17; S17mt
GeneCards (Weizmann)MRPS17
Ensembl hg19 (Hinxton) [Gene_View]  chr7:56019611-56023033 [Contig_View]  MRPS17 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:56019611-56023033 [Contig_View]  MRPS17 [Vega]
TCGA cBioPortalMRPS17
AceView (NCBI)MRPS17
Genatlas (Paris)MRPS17
WikiGenes51373
SOURCE (Princeton)MRPS17
Genetics Home Reference (NIH)MRPS17
Genomic and cartography
GoldenPath hg19 (UCSC)MRPS17  -     chr7:56019611-56023033 +  7p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPS17  -     7p11.2   [Description]    (hg38-Dec_2013)
EnsemblMRPS17 - 7p11.2 [CytoView hg19]  MRPS17 - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBIMRPS17 [Mapview hg19]  MRPS17 [Mapview hg38]
OMIM611980   
Gene and transcription
Genbank (Entrez)AB049950 AF077035 AK026553 BC037405 BC047445
RefSeq transcript (Entrez)NM_015969
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929330
Consensus coding sequences : CCDS (NCBI)MRPS17
Cluster EST : UnigeneHs.44298 [ NCBI ]
CGAP (NCI)Hs.44298
Gene ExpressionMRPS17 [ NCBI-GEO ]   MRPS17 [ EBI - ARRAY_EXPRESS ]   MRPS17 [ SEEK ]   MRPS17 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51373
GTEX Portal (Tissue expression)MRPS17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2R5
Splice isoforms : SwissVarQ9Y2R5
PhosPhoSitePlusQ9Y2R5
Domains : Interpro (EBI)NA-bd_OB-fold    Ribosomal_S17   
Domain families : Pfam (Sanger)Ribosomal_S17 (PF00366)   
Domain families : Pfam (NCBI)pfam00366   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S17 (PD001295)   
Conserved Domain (NCBI)MRPS17
DMDM Disease mutations51373
Blocks (Seattle)MRPS17
SuperfamilyQ9Y2R5
Peptide AtlasQ9Y2R5
HPRD14779
IPIIPI00744772   IPI00925656   IPI01014660   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2R5
IntAct (EBI)Q9Y2R5
BioGRIDMRPS17
STRING (EMBL)MRPS17
ZODIACMRPS17
Ontologies - Pathways
QuickGOQ9Y2R5
Ontology : AmiGOstructural constituent of ribosome  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  organelle organization  rRNA binding  mitochondrial translation  mitochondrial translation  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  organelle organization  rRNA binding  mitochondrial translation  mitochondrial translation  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPS17
Atlas of Cancer Signalling NetworkMRPS17
Wikipedia pathwaysMRPS17
Orthology - Evolution
OrthoDB51373
Phylogenetic Trees/Animal Genes : TreeFamMRPS17
HOVERGENQ9Y2R5
HOGENOMQ9Y2R5
Homologs : HomoloGeneMRPS17
Homology/Alignments : Family Browser (UCSC)MRPS17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS17
dbVarMRPS17
ClinVarMRPS17
1000_GenomesMRPS17 
Exome Variant ServerMRPS17
ExAC (Exome Aggregation Consortium)MRPS17 (select the gene name)
Genetic variants : HAPMAP51373
Genomic Variants (DGV)MRPS17 [DGVbeta]
DECIPHER (Syndromes)7:56019611-56023033  
CONAN: Copy Number AnalysisMRPS17 
Mutations
ICGC Data PortalMRPS17 
TCGA Data PortalMRPS17 
Broad Tumor PortalMRPS17
OASIS PortalMRPS17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS17
DgiDB (Drug Gene Interaction Database)MRPS17
DoCM (Curated mutations)MRPS17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS17 (select a term)
intoGenMRPS17
Cancer3DMRPS17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611980   
Orphanet
MedgenMRPS17
Genetic Testing Registry MRPS17
NextProtQ9Y2R5 [Medical]
TSGene51373
GENETestsMRPS17
Huge Navigator MRPS17 [HugePedia]
snp3D : Map Gene to Disease51373
BioCentury BCIQMRPS17
ClinGenMRPS17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51373
Chemical/Pharm GKB GenePA31002
Clinical trialMRPS17
Miscellaneous
canSAR (ICR)MRPS17 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS17
EVEXMRPS17
GoPubMedMRPS17
iHOPMRPS17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:33:48 CET 2017

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