Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRPS17 (mitochondrial ribosomal protein S17)

Identity

Alias_symbol (synonym)HSPC011
RPMS17
MRP-S17
Other aliasS17mt
HGNC (Hugo) MRPS17
LocusID (NCBI) 51373
Atlas_Id 70476
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 55951918 and ends at 55955340 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GAPDH (12p13.31) / MRPS17 (7p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS17   14047
Cards
Entrez_Gene (NCBI)MRPS17  51373  mitochondrial ribosomal protein S17
AliasesHSPC011; MRP-S17; RPMS17; S17mt
GeneCards (Weizmann)MRPS17
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:55951918-55955340 [Contig_View]  MRPS17 [Vega]
TCGA cBioPortalMRPS17
AceView (NCBI)MRPS17
Genatlas (Paris)MRPS17
WikiGenes51373
SOURCE (Princeton)MRPS17
Genetics Home Reference (NIH)MRPS17
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS17  -     chr7:55951918-55955340 +  7p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS17  -     7p11.2   [Description]    (hg19-Feb_2009)
EnsemblMRPS17 - 7p11.2 [CytoView hg19]  MRPS17 - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBIMRPS17 [Mapview hg19]  MRPS17 [Mapview hg38]
OMIM611980   
Gene and transcription
Genbank (Entrez)AB049950 AF077035 AK026553 BC037405 BC047445
RefSeq transcript (Entrez)NM_015969
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS17
Cluster EST : UnigeneHs.44298 [ NCBI ]
CGAP (NCI)Hs.44298
Gene ExpressionMRPS17 [ NCBI-GEO ]   MRPS17 [ EBI - ARRAY_EXPRESS ]   MRPS17 [ SEEK ]   MRPS17 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51373
GTEX Portal (Tissue expression)MRPS17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2R5
Splice isoforms : SwissVarQ9Y2R5
PhosPhoSitePlusQ9Y2R5
Domains : Interpro (EBI)NA-bd_OB-fold    Ribosomal_S17/S11   
Domain families : Pfam (Sanger)Ribosomal_S17 (PF00366)   
Domain families : Pfam (NCBI)pfam00366   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S17 (PD001295)   
Conserved Domain (NCBI)MRPS17
DMDM Disease mutations51373
Blocks (Seattle)MRPS17
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyQ9Y2R5
Peptide AtlasQ9Y2R5
HPRD14779
IPIIPI00744772   IPI00925656   IPI01014660   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2R5
IntAct (EBI)Q9Y2R5
BioGRIDMRPS17
STRING (EMBL)MRPS17
ZODIACMRPS17
Ontologies - Pathways
QuickGOQ9Y2R5
Ontology : AmiGOstructural constituent of ribosome  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  rRNA binding  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  rRNA binding  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPS17
Atlas of Cancer Signalling NetworkMRPS17
Wikipedia pathwaysMRPS17
Orthology - Evolution
OrthoDB51373
Phylogenetic Trees/Animal Genes : TreeFamMRPS17
HOVERGENQ9Y2R5
HOGENOMQ9Y2R5
Homologs : HomoloGeneMRPS17
Homology/Alignments : Family Browser (UCSC)MRPS17
Gene fusions - Rearrangements
Tumor Fusion PortalMRPS17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS17
dbVarMRPS17
ClinVarMRPS17
1000_GenomesMRPS17 
Exome Variant ServerMRPS17
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP51373
Genomic Variants (DGV)MRPS17 [DGVbeta]
DECIPHERMRPS17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS17 
Mutations
ICGC Data PortalMRPS17 
TCGA Data PortalMRPS17 
Broad Tumor PortalMRPS17
OASIS PortalMRPS17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS17
DgiDB (Drug Gene Interaction Database)MRPS17
DoCM (Curated mutations)MRPS17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS17 (select a term)
intoGenMRPS17
Cancer3DMRPS17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611980   
Orphanet
DisGeNETMRPS17
MedgenMRPS17
Genetic Testing Registry MRPS17
NextProtQ9Y2R5 [Medical]
TSGene51373
GENETestsMRPS17
Target ValidationMRPS17
Huge Navigator MRPS17 [HugePedia]
snp3D : Map Gene to Disease51373
BioCentury BCIQMRPS17
ClinGenMRPS17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51373
Chemical/Pharm GKB GenePA31002
Clinical trialMRPS17
Miscellaneous
canSAR (ICR)MRPS17 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS17
EVEXMRPS17
GoPubMedMRPS17
iHOPMRPS17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:16:44 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.