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MRPS18C (mitochondrial ribosomal protein S18C)

Identity

Alias_symbol (synonym)MRPS18-1
CGI-134
FLJ11146
FLJ22967
Other aliasMRP-S18-1
MRP-S18-c
S18mt-c
mrps18-c
HGNC (Hugo) MRPS18C
LocusID (NCBI) 51023
Atlas_Id 70477
Location 4q21.23  [Link to chromosome band 4q21]
Location_base_pair Starts at 83455932 and ends at 83461723 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPS18C (4q21.23) / DDX21 (10q22.1)MRPS18C (4q21.23) / ENOPH1 (4q21.22)MRPS18C (4q21.23) / SIGLEC10 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS18C   16633
Cards
Entrez_Gene (NCBI)MRPS18C  51023  mitochondrial ribosomal protein S18C
AliasesCGI-134; MRP-S18-1; MRP-S18-c; MRPS18-1; 
S18mt-c; mrps18-c
GeneCards (Weizmann)MRPS18C
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:83455932-83461723 [Contig_View]  MRPS18C [Vega]
TCGA cBioPortalMRPS18C
AceView (NCBI)MRPS18C
Genatlas (Paris)MRPS18C
WikiGenes51023
SOURCE (Princeton)MRPS18C
Genetics Home Reference (NIH)MRPS18C
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS18C  -     chr4:83455932-83461723 +  4q21.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS18C  -     4q21.23   [Description]    (hg19-Feb_2009)
EnsemblMRPS18C - 4q21.23 [CytoView hg19]  MRPS18C - 4q21.23 [CytoView hg38]
Mapping of homologs : NCBIMRPS18C [Mapview hg19]  MRPS18C [Mapview hg38]
OMIM611983   
Gene and transcription
Genbank (Entrez)AF151892 AK002008 AK026620 BC005186 BE874586
RefSeq transcript (Entrez)NM_001297767 NM_001297769 NM_001297770 NM_016067
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS18C
Cluster EST : UnigeneHs.436161 [ NCBI ]
CGAP (NCI)Hs.436161
Gene ExpressionMRPS18C [ NCBI-GEO ]   MRPS18C [ EBI - ARRAY_EXPRESS ]   MRPS18C [ SEEK ]   MRPS18C [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS18C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51023
GTEX Portal (Tissue expression)MRPS18C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3D5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3D5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3D5
Splice isoforms : SwissVarQ9Y3D5
PhosPhoSitePlusQ9Y3D5
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S18 (PS00057)   
Domains : Interpro (EBI)Ribosomal_S18    Ribosomal_S18_CS   
Domain families : Pfam (Sanger)Ribosomal_S18 (PF01084)   
Domain families : Pfam (NCBI)pfam01084   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S18 (PD002239)   
Conserved Domain (NCBI)MRPS18C
DMDM Disease mutations51023
Blocks (Seattle)MRPS18C
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyQ9Y3D5
Peptide AtlasQ9Y3D5
HPRD14782
IPIIPI00007049   IPI00965656   IPI00967023   IPI00966475   IPI00967248   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3D5
IntAct (EBI)Q9Y3D5
BioGRIDMRPS18C
STRING (EMBL)MRPS18C
ZODIACMRPS18C
Ontologies - Pathways
QuickGOQ9Y3D5
Ontology : AmiGOstructural constituent of ribosome  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  translation  cytosolic small ribosomal subunit  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  translation  cytosolic small ribosomal subunit  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPS18C
Atlas of Cancer Signalling NetworkMRPS18C
Wikipedia pathwaysMRPS18C
Orthology - Evolution
OrthoDB51023
Phylogenetic Trees/Animal Genes : TreeFamMRPS18C
HOVERGENQ9Y3D5
HOGENOMQ9Y3D5
Homologs : HomoloGeneMRPS18C
Homology/Alignments : Family Browser (UCSC)MRPS18C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS18C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS18C
dbVarMRPS18C
ClinVarMRPS18C
1000_GenomesMRPS18C 
Exome Variant ServerMRPS18C
ExAC (Exome Aggregation Consortium)MRPS18C (select the gene name)
Genetic variants : HAPMAP51023
Genomic Variants (DGV)MRPS18C [DGVbeta]
DECIPHERMRPS18C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS18C 
Mutations
ICGC Data PortalMRPS18C 
TCGA Data PortalMRPS18C 
Broad Tumor PortalMRPS18C
OASIS PortalMRPS18C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS18C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS18C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS18C
DgiDB (Drug Gene Interaction Database)MRPS18C
DoCM (Curated mutations)MRPS18C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS18C (select a term)
intoGenMRPS18C
Cancer3DMRPS18C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611983   
Orphanet
MedgenMRPS18C
Genetic Testing Registry MRPS18C
NextProtQ9Y3D5 [Medical]
TSGene51023
GENETestsMRPS18C
Target ValidationMRPS18C
Huge Navigator MRPS18C [HugePedia]
snp3D : Map Gene to Disease51023
BioCentury BCIQMRPS18C
ClinGenMRPS18C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51023
Chemical/Pharm GKB GenePA31005
Clinical trialMRPS18C
Miscellaneous
canSAR (ICR)MRPS18C (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS18C
EVEXMRPS18C
GoPubMedMRPS18C
iHOPMRPS18C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:15 CEST 2017

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