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MRPS2 (mitochondrial ribosomal protein S2)

Identity

Alias_symbol (synonym)CGI-91
Other aliasMRP-S2
S2mt
HGNC (Hugo) MRPS2
LocusID (NCBI) 51116
Atlas_Id 70478
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 138392477 and ends at 138396519 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MRPS2 (9q34.3) / MRPS2 (9q34.3)NAA35 (9q21.33) / MRPS2 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS2   14495
Cards
Entrez_Gene (NCBI)MRPS2  51116  mitochondrial ribosomal protein S2
AliasesCGI-91; MRP-S2; S2mt
GeneCards (Weizmann)MRPS2
Ensembl hg19 (Hinxton)ENSG00000122140 [Gene_View]  chr9:138392477-138396519 [Contig_View]  MRPS2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122140 [Gene_View]  chr9:138392477-138396519 [Contig_View]  MRPS2 [Vega]
ICGC DataPortalENSG00000122140
TCGA cBioPortalMRPS2
AceView (NCBI)MRPS2
Genatlas (Paris)MRPS2
WikiGenes51116
SOURCE (Princeton)MRPS2
Genetics Home Reference (NIH)MRPS2
Genomic and cartography
GoldenPath hg19 (UCSC)MRPS2  -     chr9:138392477-138396519 +  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPS2  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblMRPS2 - 9q34.3 [CytoView hg19]  MRPS2 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIMRPS2 [Mapview hg19]  MRPS2 [Mapview hg38]
OMIM611971   
Gene and transcription
Genbank (Entrez)AB055388 AF151849 AI300329 AL555185 BC004905
RefSeq transcript (Entrez)NM_016034
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929368
Consensus coding sequences : CCDS (NCBI)MRPS2
Cluster EST : UnigeneHs.382044 [ NCBI ]
CGAP (NCI)Hs.382044
Alternative Splicing GalleryENSG00000122140
Gene ExpressionMRPS2 [ NCBI-GEO ]   MRPS2 [ EBI - ARRAY_EXPRESS ]   MRPS2 [ SEEK ]   MRPS2 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51116
GTEX Portal (Tissue expression)MRPS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y399   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y399  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y399
Splice isoforms : SwissVarQ9Y399
PhosPhoSitePlusQ9Y399
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S2_1 (PS00962)   
Domains : Interpro (EBI)Ribosomal_S2    Ribosomal_S2_bac/mit/plastid    Ribosomal_S2_CS    Ribosomal_S2_flav_dom   
Domain families : Pfam (Sanger)Ribosomal_S2 (PF00318)   
Domain families : Pfam (NCBI)pfam00318   
Conserved Domain (NCBI)MRPS2
DMDM Disease mutations51116
Blocks (Seattle)MRPS2
SuperfamilyQ9Y399
Human Protein AtlasENSG00000122140
Peptide AtlasQ9Y399
HPRD14783
IPIIPI00646859   IPI00006970   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y399
IntAct (EBI)Q9Y399
FunCoupENSG00000122140
BioGRIDMRPS2
STRING (EMBL)MRPS2
ZODIACMRPS2
Ontologies - Pathways
QuickGOQ9Y399
Ontology : AmiGOpositive regulation of defense response to virus by host  structural constituent of ribosome  structural constituent of ribosome  mitochondrion  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  mitochondrial translation  activation of mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  structural constituent of ribosome  structural constituent of ribosome  mitochondrion  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  mitochondrial translation  activation of mitophagy in response to mitochondrial depolarization  
Pathways : KEGGRibosome   
NDEx NetworkMRPS2
Atlas of Cancer Signalling NetworkMRPS2
Wikipedia pathwaysMRPS2
Orthology - Evolution
OrthoDB51116
GeneTree (enSembl)ENSG00000122140
Phylogenetic Trees/Animal Genes : TreeFamMRPS2
HOVERGENQ9Y399
HOGENOMQ9Y399
Homologs : HomoloGeneMRPS2
Homology/Alignments : Family Browser (UCSC)MRPS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS2
dbVarMRPS2
ClinVarMRPS2
1000_GenomesMRPS2 
Exome Variant ServerMRPS2
ExAC (Exome Aggregation Consortium)MRPS2 (select the gene name)
Genetic variants : HAPMAP51116
Genomic Variants (DGV)MRPS2 [DGVbeta]
DECIPHER (Syndromes)9:138392477-138396519  ENSG00000122140
CONAN: Copy Number AnalysisMRPS2 
Mutations
ICGC Data PortalMRPS2 
TCGA Data PortalMRPS2 
Broad Tumor PortalMRPS2
OASIS PortalMRPS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS2
DgiDB (Drug Gene Interaction Database)MRPS2
DoCM (Curated mutations)MRPS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS2 (select a term)
intoGenMRPS2
Cancer3DMRPS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611971   
Orphanet
MedgenMRPS2
Genetic Testing Registry MRPS2
NextProtQ9Y399 [Medical]
TSGene51116
GENETestsMRPS2
Huge Navigator MRPS2 [HugePedia]
snp3D : Map Gene to Disease51116
BioCentury BCIQMRPS2
ClinGenMRPS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51116
Chemical/Pharm GKB GenePA31007
Clinical trialMRPS2
Miscellaneous
canSAR (ICR)MRPS2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS2
EVEXMRPS2
GoPubMedMRPS2
iHOPMRPS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:33:48 CET 2017

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