Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MRPS22 (mitochondrial ribosomal protein S22)

Identity

Alias (NCBI)C3orf5
COXPD5
GIBT
GK002
MRP-S22
ODG7
RPMS22
HGNC (Hugo) MRPS22
HGNC Alias symbMRP-S22
GK002
C3orf5
GIBT
LocusID (NCBI) 56945
Atlas_Id 70480
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 139344020 and ends at 139357129 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATXN7L3B (12q21.1) / MRPS22 (3q23)MRPL15 (8q11.23) / MRPS22 (3q23)MRPS22 (3q23) / CMPK1 (1p33)
MRPS22 (3q23) / MRPS22 (3q23)MRPS22 (3q23) / SCML4 (6q21)MRPS22 (3q23) / SLC9A9 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MRPS22   14508
Cards
Entrez_Gene (NCBI)MRPS22    mitochondrial ribosomal protein S22
AliasesC3orf5; COXPD5; GIBT; GK002; 
MRP-S22; ODG7; RPMS22
GeneCards (Weizmann)MRPS22
Ensembl hg19 (Hinxton)ENSG00000175110 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175110 [Gene_View]  ENSG00000175110 [Sequence]  chr3:139344020-139357129 [Contig_View]  MRPS22 [Vega]
ICGC DataPortalENSG00000175110
TCGA cBioPortalMRPS22
AceView (NCBI)MRPS22
Genatlas (Paris)MRPS22
SOURCE (Princeton)MRPS22
Genetics Home Reference (NIH)MRPS22
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS22  -     chr3:139344020-139357129 +  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS22  -     3q23   [Description]    (hg19-Feb_2009)
GoldenPathMRPS22 - 3q23 [CytoView hg19]  MRPS22 - 3q23 [CytoView hg38]
ImmunoBaseENSG00000175110
Genome Data Viewer NCBIMRPS22 [Mapview hg19]  
OMIM605810   611719   618117   
Gene and transcription
Genbank (Entrez)AB208981 AF063603 AF226045 AF321613 AK075436
RefSeq transcript (Entrez)NM_001363857 NM_001363893 NM_020191
Consensus coding sequences : CCDS (NCBI)MRPS22
Gene ExpressionMRPS22 [ NCBI-GEO ]   MRPS22 [ EBI - ARRAY_EXPRESS ]   MRPS22 [ SEEK ]   MRPS22 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS22 [ Firebrowse - Broad ]
GenevisibleExpression of MRPS22 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56945
GTEX Portal (Tissue expression)MRPS22
Human Protein AtlasENSG00000175110-MRPS22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82650   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82650  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82650
PhosPhoSitePlusP82650
Domains : Interpro (EBI)Ribosomal_S22_mit   
Domain families : Pfam (Sanger)MRP-S22 (PF10245)   
Domain families : Pfam (NCBI)pfam10245   
Conserved Domain (NCBI)MRPS22
PDB (RSDB)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB Europe3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (PDBSum)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (IMB)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
Structural Biology KnowledgeBase3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SCOP (Structural Classification of Proteins)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
CATH (Classification of proteins structures)3J9M    6NU2    6NU3    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SuperfamilyP82650
AlphaFold pdb e-kbP82650   
Human Protein Atlas [tissue]ENSG00000175110-MRPS22 [tissue]
HPRD10430
Protein Interaction databases
DIP (DOE-UCLA)P82650
IntAct (EBI)P82650
BioGRIDMRPS22
STRING (EMBL)MRPS22
ZODIACMRPS22
Ontologies - Pathways
QuickGOP82650
Ontology : AmiGOstructural constituent of ribosome  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  biological_process  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  biological_process  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS22
Atlas of Cancer Signalling NetworkMRPS22
Wikipedia pathwaysMRPS22
Orthology - Evolution
OrthoDB56945
GeneTree (enSembl)ENSG00000175110
Phylogenetic Trees/Animal Genes : TreeFamMRPS22
Homologs : HomoloGeneMRPS22
Homology/Alignments : Family Browser (UCSC)MRPS22
Gene fusions - Rearrangements
Fusion : QuiverMRPS22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS22
dbVarMRPS22
ClinVarMRPS22
MonarchMRPS22
1000_GenomesMRPS22 
Exome Variant ServerMRPS22
GNOMAD BrowserENSG00000175110
Varsome BrowserMRPS22
ACMGMRPS22 variants
VarityP82650
Genomic Variants (DGV)MRPS22 [DGVbeta]
DECIPHERMRPS22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS22 
Mutations
ICGC Data PortalMRPS22 
TCGA Data PortalMRPS22 
Broad Tumor PortalMRPS22
OASIS PortalMRPS22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS22  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMRPS22
Mutations and Diseases : HGMDMRPS22
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMRPS22
DgiDB (Drug Gene Interaction Database)MRPS22
DoCM (Curated mutations)MRPS22
CIViC (Clinical Interpretations of Variants in Cancer)MRPS22
Cancer3DMRPS22
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605810    611719    618117   
Orphanet16742   
DisGeNETMRPS22
MedgenMRPS22
Genetic Testing Registry MRPS22
NextProtP82650 [Medical]
GENETestsMRPS22
Target ValidationMRPS22
Huge Navigator MRPS22 [HugePedia]
ClinGenMRPS22
Clinical trials, drugs, therapy
MyCancerGenomeMRPS22
Protein Interactions : CTDMRPS22
Pharm GKB GenePA31010
PharosP82650
Clinical trialMRPS22
Miscellaneous
canSAR (ICR)MRPS22
HarmonizomeMRPS22
DataMed IndexMRPS22
Probes
Litterature
PubMed99 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMRPS22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:11:46 CEST 2021

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