Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MRPS22 (mitochondrial ribosomal protein S22)

Identity

Alias_symbol (synonym)MRP-S22
GK002
C3orf5
GIBT
Other aliasCOXPD5
RPMS22
HGNC (Hugo) MRPS22
LocusID (NCBI) 56945
Atlas_Id 70480
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 139344019 and ends at 139357045 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATXN7L3B (12q21.1) / MRPS22 (3q23)MRPL15 (8q11.23) / MRPS22 (3q23)MRPS22 (3q23) / CMPK1 (1p33)
MRPS22 (3q23) / MRPS22 (3q23)MRPS22 (3q23) / SCML4 (6q21)MRPS22 (3q23) / SLC9A9 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS22   14508
Cards
Entrez_Gene (NCBI)MRPS22  56945  mitochondrial ribosomal protein S22
AliasesC3orf5; COXPD5; GIBT; GK002; 
MRP-S22; RPMS22
GeneCards (Weizmann)MRPS22
Ensembl hg19 (Hinxton)ENSG00000175110 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175110 [Gene_View]  chr3:139344019-139357045 [Contig_View]  MRPS22 [Vega]
ICGC DataPortalENSG00000175110
TCGA cBioPortalMRPS22
AceView (NCBI)MRPS22
Genatlas (Paris)MRPS22
WikiGenes56945
SOURCE (Princeton)MRPS22
Genetics Home Reference (NIH)MRPS22
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS22  -     chr3:139344019-139357045 +  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS22  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblMRPS22 - 3q23 [CytoView hg19]  MRPS22 - 3q23 [CytoView hg38]
Mapping of homologs : NCBIMRPS22 [Mapview hg19]  MRPS22 [Mapview hg38]
OMIM605810   611719   
Gene and transcription
Genbank (Entrez)AB208981 AF063603 AF226045 AF321613 AK075436
RefSeq transcript (Entrez)NM_020191
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS22
Cluster EST : UnigeneHs.745001 [ NCBI ]
CGAP (NCI)Hs.745001
Alternative Splicing GalleryENSG00000175110
Gene ExpressionMRPS22 [ NCBI-GEO ]   MRPS22 [ EBI - ARRAY_EXPRESS ]   MRPS22 [ SEEK ]   MRPS22 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56945
GTEX Portal (Tissue expression)MRPS22
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82650   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82650  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82650
Splice isoforms : SwissVarP82650
PhosPhoSitePlusP82650
Domains : Interpro (EBI)Ribosomal_S22_mit   
Domain families : Pfam (Sanger)MRP-S22 (PF10245)   
Domain families : Pfam (NCBI)pfam10245   
Conserved Domain (NCBI)MRPS22
DMDM Disease mutations56945
Blocks (Seattle)MRPS22
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyP82650
Human Protein AtlasENSG00000175110
Peptide AtlasP82650
HPRD10430
IPIIPI00013146   IPI00789525   IPI00945124   IPI00793335   IPI00791542   IPI00792175   IPI00944990   IPI00946566   
Protein Interaction databases
DIP (DOE-UCLA)P82650
IntAct (EBI)P82650
FunCoupENSG00000175110
BioGRIDMRPS22
STRING (EMBL)MRPS22
ZODIACMRPS22
Ontologies - Pathways
QuickGOP82650
Ontology : AmiGOstructural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial small ribosomal subunit  biological_process  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial ribosome  mitochondrial small ribosomal subunit  biological_process  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS22
Atlas of Cancer Signalling NetworkMRPS22
Wikipedia pathwaysMRPS22
Orthology - Evolution
OrthoDB56945
GeneTree (enSembl)ENSG00000175110
Phylogenetic Trees/Animal Genes : TreeFamMRPS22
HOVERGENP82650
HOGENOMP82650
Homologs : HomoloGeneMRPS22
Homology/Alignments : Family Browser (UCSC)MRPS22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS22
dbVarMRPS22
ClinVarMRPS22
1000_GenomesMRPS22 
Exome Variant ServerMRPS22
ExAC (Exome Aggregation Consortium)MRPS22 (select the gene name)
Genetic variants : HAPMAP56945
Genomic Variants (DGV)MRPS22 [DGVbeta]
DECIPHERMRPS22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS22 
Mutations
ICGC Data PortalMRPS22 
TCGA Data PortalMRPS22 
Broad Tumor PortalMRPS22
OASIS PortalMRPS22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS22
DgiDB (Drug Gene Interaction Database)MRPS22
DoCM (Curated mutations)MRPS22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS22 (select a term)
intoGenMRPS22
Cancer3DMRPS22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605810    611719   
Orphanet16742   
MedgenMRPS22
Genetic Testing Registry MRPS22
NextProtP82650 [Medical]
TSGene56945
GENETestsMRPS22
Target ValidationMRPS22
Huge Navigator MRPS22 [HugePedia]
snp3D : Map Gene to Disease56945
BioCentury BCIQMRPS22
ClinGenMRPS22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56945
Chemical/Pharm GKB GenePA31010
Clinical trialMRPS22
Miscellaneous
canSAR (ICR)MRPS22 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS22
EVEXMRPS22
GoPubMedMRPS22
iHOPMRPS22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:16 CEST 2017

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