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MRPS23 (mitochondrial ribosomal protein S23)

Identity

Alias_symbol (synonym)MRP-S23
CGI-138
HSPC329
Other alias
HGNC (Hugo) MRPS23
LocusID (NCBI) 51649
Atlas_Id 70481
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 57838926 and ends at 57850072 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPS23 (17q22) / CUEDC1 (17q22)MRPS23 (17q22) / VEZF1 (17q22)MRPS23 CUEDC1
MRPS23 VEZF1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS23   14509
Cards
Entrez_Gene (NCBI)MRPS23  51649  mitochondrial ribosomal protein S23
AliasesCGI-138; HSPC329; MRP-S23
GeneCards (Weizmann)MRPS23
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:57838926-57850072 [Contig_View]  MRPS23 [Vega]
TCGA cBioPortalMRPS23
AceView (NCBI)MRPS23
Genatlas (Paris)MRPS23
WikiGenes51649
SOURCE (Princeton)MRPS23
Genetics Home Reference (NIH)MRPS23
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS23  -     chr17:57838926-57850072 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS23  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblMRPS23 - 17q22 [CytoView hg19]  MRPS23 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIMRPS23 [Mapview hg19]  MRPS23 [Mapview hg38]
OMIM611985   
Gene and transcription
Genbank (Entrez)AF151896 AF161447 AK312729 AW299554 BC000242
RefSeq transcript (Entrez)NM_016070
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS23
Cluster EST : UnigeneHs.5836 [ NCBI ]
CGAP (NCI)Hs.5836
Gene ExpressionMRPS23 [ NCBI-GEO ]   MRPS23 [ EBI - ARRAY_EXPRESS ]   MRPS23 [ SEEK ]   MRPS23 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51649
GTEX Portal (Tissue expression)MRPS23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3D9
Splice isoforms : SwissVarQ9Y3D9
PhosPhoSitePlusQ9Y3D9
Domains : Interpro (EBI)Ribosomal_S23/Rsm25    Ribosomal_S23/S25_mit   
Domain families : Pfam (Sanger)MRP-S23 (PF10484)   
Domain families : Pfam (NCBI)pfam10484   
Conserved Domain (NCBI)MRPS23
DMDM Disease mutations51649
Blocks (Seattle)MRPS23
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyQ9Y3D9
Peptide AtlasQ9Y3D9
HPRD17592
IPIIPI00032881   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3D9
IntAct (EBI)Q9Y3D9
BioGRIDMRPS23
STRING (EMBL)MRPS23
ZODIACMRPS23
Ontologies - Pathways
QuickGOQ9Y3D9
Ontology : AmiGORNA binding  structural constituent of ribosome  protein binding  mitochondrion  mitochondrion  mitochondrial inner membrane  ribosome  nuclear membrane  intermediate filament cytoskeleton  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  protein binding  mitochondrion  mitochondrion  mitochondrial inner membrane  ribosome  nuclear membrane  intermediate filament cytoskeleton  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS23
Atlas of Cancer Signalling NetworkMRPS23
Wikipedia pathwaysMRPS23
Orthology - Evolution
OrthoDB51649
Phylogenetic Trees/Animal Genes : TreeFamMRPS23
HOVERGENQ9Y3D9
HOGENOMQ9Y3D9
Homologs : HomoloGeneMRPS23
Homology/Alignments : Family Browser (UCSC)MRPS23
Gene fusions - Rearrangements
Fusion: TCGAMRPS23 CUEDC1
Fusion: TCGAMRPS23 VEZF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS23
dbVarMRPS23
ClinVarMRPS23
1000_GenomesMRPS23 
Exome Variant ServerMRPS23
ExAC (Exome Aggregation Consortium)MRPS23 (select the gene name)
Genetic variants : HAPMAP51649
Genomic Variants (DGV)MRPS23 [DGVbeta]
DECIPHERMRPS23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS23 
Mutations
ICGC Data PortalMRPS23 
TCGA Data PortalMRPS23 
Broad Tumor PortalMRPS23
OASIS PortalMRPS23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS23
DgiDB (Drug Gene Interaction Database)MRPS23
DoCM (Curated mutations)MRPS23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS23 (select a term)
intoGenMRPS23
Cancer3DMRPS23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611985   
Orphanet
MedgenMRPS23
Genetic Testing Registry MRPS23
NextProtQ9Y3D9 [Medical]
TSGene51649
GENETestsMRPS23
Target ValidationMRPS23
Huge Navigator MRPS23 [HugePedia]
snp3D : Map Gene to Disease51649
BioCentury BCIQMRPS23
ClinGenMRPS23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51649
Chemical/Pharm GKB GenePA31011
Clinical trialMRPS23
Miscellaneous
canSAR (ICR)MRPS23 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS23
EVEXMRPS23
GoPubMedMRPS23
iHOPMRPS23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:16 CEST 2017

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