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MRPS26 (mitochondrial ribosomal protein S26)

Identity

Alias_namesC20orf193
chromosome 20 open reading frame 193
Alias_symbol (synonym)MRP-S13
MRP-S26
RPMS13
dJ534B8.3
Other aliasGI008
MRPS13
NY-BR-87
HGNC (Hugo) MRPS26
LocusID (NCBI) 64949
Atlas_Id 70484
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3046029 and ends at 3048250 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPS26 (20p13) / NR1H2 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS26   14045
Cards
Entrez_Gene (NCBI)MRPS26  64949  mitochondrial ribosomal protein S26
AliasesC20orf193; GI008; MRP-S13; MRP-S26; 
MRPS13; NY-BR-87; RPMS13; dJ534B8.3
GeneCards (Weizmann)MRPS26
Ensembl hg19 (Hinxton)ENSG00000125901 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125901 [Gene_View]  chr20:3046029-3048250 [Contig_View]  MRPS26 [Vega]
ICGC DataPortalENSG00000125901
TCGA cBioPortalMRPS26
AceView (NCBI)MRPS26
Genatlas (Paris)MRPS26
WikiGenes64949
SOURCE (Princeton)MRPS26
Genetics Home Reference (NIH)MRPS26
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS26  -     chr20:3046029-3048250 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS26  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblMRPS26 - 20p13 [CytoView hg19]  MRPS26 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIMRPS26 [Mapview hg19]  MRPS26 [Mapview hg38]
OMIM611988   
Gene and transcription
Genbank (Entrez)AF308301 BC013018 BI115733 HQ448715
RefSeq transcript (Entrez)NM_030811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS26
Cluster EST : UnigeneHs.18946 [ NCBI ]
CGAP (NCI)Hs.18946
Alternative Splicing GalleryENSG00000125901
Gene ExpressionMRPS26 [ NCBI-GEO ]   MRPS26 [ EBI - ARRAY_EXPRESS ]   MRPS26 [ SEEK ]   MRPS26 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64949
GTEX Portal (Tissue expression)MRPS26
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYN8
Splice isoforms : SwissVarQ9BYN8
PhosPhoSitePlusQ9BYN8
Domains : Interpro (EBI)MRPS26   
Domain families : Pfam (Sanger)MRP-S26 (PF14943)   
Domain families : Pfam (NCBI)pfam14943   
Conserved Domain (NCBI)MRPS26
DMDM Disease mutations64949
Blocks (Seattle)MRPS26
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyQ9BYN8
Human Protein AtlasENSG00000125901
Peptide AtlasQ9BYN8
HPRD17595
IPIIPI00006606   IPI00385791   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYN8
IntAct (EBI)Q9BYN8
FunCoupENSG00000125901
BioGRIDMRPS26
STRING (EMBL)MRPS26
ZODIACMRPS26
Ontologies - Pathways
QuickGOQ9BYN8
Ontology : AmiGORNA binding  nucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  DNA damage response, detection of DNA damage  peptide biosynthetic process  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  nucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  DNA damage response, detection of DNA damage  peptide biosynthetic process  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS26
Atlas of Cancer Signalling NetworkMRPS26
Wikipedia pathwaysMRPS26
Orthology - Evolution
OrthoDB64949
GeneTree (enSembl)ENSG00000125901
Phylogenetic Trees/Animal Genes : TreeFamMRPS26
HOVERGENQ9BYN8
HOGENOMQ9BYN8
Homologs : HomoloGeneMRPS26
Homology/Alignments : Family Browser (UCSC)MRPS26
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS26
dbVarMRPS26
ClinVarMRPS26
1000_GenomesMRPS26 
Exome Variant ServerMRPS26
ExAC (Exome Aggregation Consortium)MRPS26 (select the gene name)
Genetic variants : HAPMAP64949
Genomic Variants (DGV)MRPS26 [DGVbeta]
DECIPHERMRPS26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS26 
Mutations
ICGC Data PortalMRPS26 
TCGA Data PortalMRPS26 
Broad Tumor PortalMRPS26
OASIS PortalMRPS26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS26
DgiDB (Drug Gene Interaction Database)MRPS26
DoCM (Curated mutations)MRPS26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS26 (select a term)
intoGenMRPS26
Cancer3DMRPS26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611988   
Orphanet
MedgenMRPS26
Genetic Testing Registry MRPS26
NextProtQ9BYN8 [Medical]
TSGene64949
GENETestsMRPS26
Target ValidationMRPS26
Huge Navigator MRPS26 [HugePedia]
snp3D : Map Gene to Disease64949
BioCentury BCIQMRPS26
ClinGenMRPS26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64949
Chemical/Pharm GKB GenePA31014
Clinical trialMRPS26
Miscellaneous
canSAR (ICR)MRPS26 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS26
EVEXMRPS26
GoPubMedMRPS26
iHOPMRPS26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:16 CEST 2017

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