Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MRPS31 (mitochondrial ribosomal protein S31)

Identity

Alias_symbol (synonym)IMOGN38
Other aliasMRP-S31
S31mt
HGNC (Hugo) MRPS31
LocusID (NCBI) 10240
Atlas_Id 70486
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 40729296 and ends at 40771211 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AKAP11 (13q14.11) / MRPS31 (13q14.11)USP9X (Xp11.4) / MRPS31 (13q14.11)AKAP11 MRPS31
USP9X MRPS31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS31   16632
Cards
Entrez_Gene (NCBI)MRPS31  10240  mitochondrial ribosomal protein S31
AliasesIMOGN38; MRP-S31; S31mt
GeneCards (Weizmann)MRPS31
Ensembl hg19 (Hinxton)ENSG00000102738 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102738 [Gene_View]  chr13:40729296-40771211 [Contig_View]  MRPS31 [Vega]
ICGC DataPortalENSG00000102738
TCGA cBioPortalMRPS31
AceView (NCBI)MRPS31
Genatlas (Paris)MRPS31
WikiGenes10240
SOURCE (Princeton)MRPS31
Genetics Home Reference (NIH)MRPS31
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS31  -     chr13:40729296-40771211 -  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS31  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblMRPS31 - 13q14.11 [CytoView hg19]  MRPS31 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBIMRPS31 [Mapview hg19]  MRPS31 [Mapview hg38]
OMIM611992   
Gene and transcription
Genbank (Entrez)AI343737 AI343739 AK315248 AV712217 BC010159
RefSeq transcript (Entrez)NM_005830
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS31
Cluster EST : UnigeneHs.596607 [ NCBI ]
CGAP (NCI)Hs.596607
Alternative Splicing GalleryENSG00000102738
Gene ExpressionMRPS31 [ NCBI-GEO ]   MRPS31 [ EBI - ARRAY_EXPRESS ]   MRPS31 [ SEEK ]   MRPS31 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10240
GTEX Portal (Tissue expression)MRPS31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92665   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92665  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92665
Splice isoforms : SwissVarQ92665
PhosPhoSitePlusQ92665
Domains : Interpro (EBI)MRP-S31   
Domain families : Pfam (Sanger)MRP-S31 (PF15433)   
Domain families : Pfam (NCBI)pfam15433   
Conserved Domain (NCBI)MRPS31
DMDM Disease mutations10240
Blocks (Seattle)MRPS31
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyQ92665
Human Protein AtlasENSG00000102738
Peptide AtlasQ92665
HPRD10098
IPIIPI00294242   
Protein Interaction databases
DIP (DOE-UCLA)Q92665
IntAct (EBI)Q92665
FunCoupENSG00000102738
BioGRIDMRPS31
STRING (EMBL)MRPS31
ZODIACMRPS31
Ontologies - Pathways
QuickGOQ92665
Ontology : AmiGORNA binding  structural constituent of ribosome  protein binding  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  protein domain specific binding  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  protein binding  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  protein domain specific binding  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS31
Atlas of Cancer Signalling NetworkMRPS31
Wikipedia pathwaysMRPS31
Orthology - Evolution
OrthoDB10240
GeneTree (enSembl)ENSG00000102738
Phylogenetic Trees/Animal Genes : TreeFamMRPS31
HOVERGENQ92665
HOGENOMQ92665
Homologs : HomoloGeneMRPS31
Homology/Alignments : Family Browser (UCSC)MRPS31
Gene fusions - Rearrangements
Fusion: TCGAAKAP11 MRPS31
Fusion: TCGAUSP9X MRPS31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS31
dbVarMRPS31
ClinVarMRPS31
1000_GenomesMRPS31 
Exome Variant ServerMRPS31
ExAC (Exome Aggregation Consortium)MRPS31 (select the gene name)
Genetic variants : HAPMAP10240
Genomic Variants (DGV)MRPS31 [DGVbeta]
DECIPHERMRPS31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS31 
Mutations
ICGC Data PortalMRPS31 
TCGA Data PortalMRPS31 
Broad Tumor PortalMRPS31
OASIS PortalMRPS31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS31
DgiDB (Drug Gene Interaction Database)MRPS31
DoCM (Curated mutations)MRPS31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS31 (select a term)
intoGenMRPS31
Cancer3DMRPS31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611992   
Orphanet
MedgenMRPS31
Genetic Testing Registry MRPS31
NextProtQ92665 [Medical]
TSGene10240
GENETestsMRPS31
Target ValidationMRPS31
Huge Navigator MRPS31 [HugePedia]
snp3D : Map Gene to Disease10240
BioCentury BCIQMRPS31
ClinGenMRPS31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10240
Chemical/Pharm GKB GenePA31019
Clinical trialMRPS31
Miscellaneous
canSAR (ICR)MRPS31 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS31
EVEXMRPS31
GoPubMedMRPS31
iHOPMRPS31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:36 CEST 2017

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