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MRPS33 (mitochondrial ribosomal protein S33)

Identity

Alias_symbol (synonym)CGI-139
Other aliasMRP-S33
PTD003
S33mt
HGNC (Hugo) MRPS33
LocusID (NCBI) 51650
Atlas_Id 70488
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 140705961 and ends at 140714479 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BRAF (7q34) / MRPS33 (7q34)CTNNB1 (3p22.1) / MRPS33 (7q34)MKRN1 (7q34) / MRPS33 (7q34)
BRAF MRPS33MKRN1 MRPS33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS33   16634
Cards
Entrez_Gene (NCBI)MRPS33  51650  mitochondrial ribosomal protein S33
AliasesCGI-139; MRP-S33; PTD003; S33mt
GeneCards (Weizmann)MRPS33
Ensembl hg19 (Hinxton)ENSG00000090263 [Gene_View]  chr7:140705961-140714479 [Contig_View]  MRPS33 [Vega]
Ensembl hg38 (Hinxton)ENSG00000090263 [Gene_View]  chr7:140705961-140714479 [Contig_View]  MRPS33 [Vega]
ICGC DataPortalENSG00000090263
TCGA cBioPortalMRPS33
AceView (NCBI)MRPS33
Genatlas (Paris)MRPS33
WikiGenes51650
SOURCE (Princeton)MRPS33
Genetics Home Reference (NIH)MRPS33
Genomic and cartography
GoldenPath hg19 (UCSC)MRPS33  -     chr7:140705961-140714479 -  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPS33  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblMRPS33 - 7q34 [CytoView hg19]  MRPS33 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIMRPS33 [Mapview hg19]  MRPS33 [Mapview hg38]
OMIM611993   
Gene and transcription
Genbank (Entrez)AA743808 AF078858 AF151897 AI305281 AK024776
RefSeq transcript (Entrez)NM_016071 NM_053035
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)MRPS33
Cluster EST : UnigeneHs.416207 [ NCBI ]
CGAP (NCI)Hs.416207
Alternative Splicing GalleryENSG00000090263
Gene ExpressionMRPS33 [ NCBI-GEO ]   MRPS33 [ EBI - ARRAY_EXPRESS ]   MRPS33 [ SEEK ]   MRPS33 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51650
GTEX Portal (Tissue expression)MRPS33
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y291   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y291  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y291
Splice isoforms : SwissVarQ9Y291
PhosPhoSitePlusQ9Y291
Domains : Interpro (EBI)Ribosomal_S27/S33_mit   
Domain families : Pfam (Sanger)MRP-S33 (PF08293)   
Domain families : Pfam (NCBI)pfam08293   
Conserved Domain (NCBI)MRPS33
DMDM Disease mutations51650
Blocks (Seattle)MRPS33
SuperfamilyQ9Y291
Human Protein AtlasENSG00000090263
Peptide AtlasQ9Y291
HPRD17598
IPIIPI00654654   IPI01010059   IPI00945880   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y291
IntAct (EBI)Q9Y291
FunCoupENSG00000090263
BioGRIDMRPS33
STRING (EMBL)MRPS33
ZODIACMRPS33
Ontologies - Pathways
QuickGOQ9Y291
Ontology : AmiGOstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  translation  organelle organization  mitochondrial translation  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  translation  organelle organization  mitochondrial translation  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS33
Atlas of Cancer Signalling NetworkMRPS33
Wikipedia pathwaysMRPS33
Orthology - Evolution
OrthoDB51650
GeneTree (enSembl)ENSG00000090263
Phylogenetic Trees/Animal Genes : TreeFamMRPS33
HOVERGENQ9Y291
HOGENOMQ9Y291
Homologs : HomoloGeneMRPS33
Homology/Alignments : Family Browser (UCSC)MRPS33
Gene fusions - Rearrangements
Fusion: TCGABRAF MRPS33
Fusion: TCGAMKRN1 MRPS33
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS33
dbVarMRPS33
ClinVarMRPS33
1000_GenomesMRPS33 
Exome Variant ServerMRPS33
ExAC (Exome Aggregation Consortium)MRPS33 (select the gene name)
Genetic variants : HAPMAP51650
Genomic Variants (DGV)MRPS33 [DGVbeta]
DECIPHER (Syndromes)7:140705961-140714479  ENSG00000090263
CONAN: Copy Number AnalysisMRPS33 
Mutations
ICGC Data PortalMRPS33 
TCGA Data PortalMRPS33 
Broad Tumor PortalMRPS33
OASIS PortalMRPS33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS33
DgiDB (Drug Gene Interaction Database)MRPS33
DoCM (Curated mutations)MRPS33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS33 (select a term)
intoGenMRPS33
Cancer3DMRPS33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611993   
Orphanet
MedgenMRPS33
Genetic Testing Registry MRPS33
NextProtQ9Y291 [Medical]
TSGene51650
GENETestsMRPS33
Huge Navigator MRPS33 [HugePedia]
snp3D : Map Gene to Disease51650
BioCentury BCIQMRPS33
ClinGenMRPS33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51650
Chemical/Pharm GKB GenePA31020
Clinical trialMRPS33
Miscellaneous
canSAR (ICR)MRPS33 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS33
EVEXMRPS33
GoPubMedMRPS33
iHOPMRPS33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:33:51 CET 2017

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