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MRPS34 (mitochondrial ribosomal protein S34)

Identity

Alias_symbol (synonym)MRP-S12
MGC2616
Other aliasMRP-S34
MRPS12
HGNC (Hugo) MRPS34
LocusID (NCBI) 65993
Atlas_Id 70489
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1821896 and ends at 1823140 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MRPS34 (16p13.3) / OTX1 (2p15)MRPS34 (16p13.3) / PRKDC (8q11.21)MRPS34 (16p13.3) / ST6GAL1 (3q27.3)
SLC38A5 (Xp11.23) / MRPS34 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS34   16618
Cards
Entrez_Gene (NCBI)MRPS34  65993  mitochondrial ribosomal protein S34
AliasesMRP-S12; MRP-S34; MRPS12
GeneCards (Weizmann)MRPS34
Ensembl hg19 (Hinxton)ENSG00000074071 [Gene_View]  chr16:1821896-1823140 [Contig_View]  MRPS34 [Vega]
Ensembl hg38 (Hinxton)ENSG00000074071 [Gene_View]  chr16:1821896-1823140 [Contig_View]  MRPS34 [Vega]
ICGC DataPortalENSG00000074071
TCGA cBioPortalMRPS34
AceView (NCBI)MRPS34
Genatlas (Paris)MRPS34
WikiGenes65993
SOURCE (Princeton)MRPS34
Genetics Home Reference (NIH)MRPS34
Genomic and cartography
GoldenPath hg19 (UCSC)MRPS34  -     chr16:1821896-1823140 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MRPS34  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblMRPS34 - 16p13.3 [CytoView hg19]  MRPS34 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIMRPS34 [Mapview hg19]  MRPS34 [Mapview hg38]
OMIM611994   
Gene and transcription
Genbank (Entrez)AV709743 BC001182 EF036486 HY279576 JF432468
RefSeq transcript (Entrez)NM_001300900 NM_023936
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)MRPS34
Cluster EST : UnigeneHs.720388 [ NCBI ]
CGAP (NCI)Hs.720388
Alternative Splicing GalleryENSG00000074071
Gene ExpressionMRPS34 [ NCBI-GEO ]   MRPS34 [ EBI - ARRAY_EXPRESS ]   MRPS34 [ SEEK ]   MRPS34 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65993
GTEX Portal (Tissue expression)MRPS34
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82930   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82930  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82930
Splice isoforms : SwissVarP82930
PhosPhoSitePlusP82930
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MRPS34
DMDM Disease mutations65993
Blocks (Seattle)MRPS34
SuperfamilyP82930
Human Protein AtlasENSG00000074071
Peptide AtlasP82930
HPRD17599
IPIIPI00169413   IPI00969207   IPI00983882   IPI00658155   
Protein Interaction databases
DIP (DOE-UCLA)P82930
IntAct (EBI)P82930
FunCoupENSG00000074071
BioGRIDMRPS34
STRING (EMBL)MRPS34
ZODIACMRPS34
Ontologies - Pathways
QuickGOP82930
Ontology : AmiGOmitochondrion  mitochondrial inner membrane  ribosome  organelle organization  mitochondrial translation  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBImitochondrion  mitochondrial inner membrane  ribosome  organelle organization  mitochondrial translation  mitochondrial translational initiation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS34
Atlas of Cancer Signalling NetworkMRPS34
Wikipedia pathwaysMRPS34
Orthology - Evolution
OrthoDB65993
GeneTree (enSembl)ENSG00000074071
Phylogenetic Trees/Animal Genes : TreeFamMRPS34
HOVERGENP82930
HOGENOMP82930
Homologs : HomoloGeneMRPS34
Homology/Alignments : Family Browser (UCSC)MRPS34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS34
dbVarMRPS34
ClinVarMRPS34
1000_GenomesMRPS34 
Exome Variant ServerMRPS34
ExAC (Exome Aggregation Consortium)MRPS34 (select the gene name)
Genetic variants : HAPMAP65993
Genomic Variants (DGV)MRPS34 [DGVbeta]
DECIPHER (Syndromes)16:1821896-1823140  ENSG00000074071
CONAN: Copy Number AnalysisMRPS34 
Mutations
ICGC Data PortalMRPS34 
TCGA Data PortalMRPS34 
Broad Tumor PortalMRPS34
OASIS PortalMRPS34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS34
DgiDB (Drug Gene Interaction Database)MRPS34
DoCM (Curated mutations)MRPS34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS34 (select a term)
intoGenMRPS34
Cancer3DMRPS34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611994   
Orphanet
MedgenMRPS34
Genetic Testing Registry MRPS34
NextProtP82930 [Medical]
TSGene65993
GENETestsMRPS34
Huge Navigator MRPS34 [HugePedia]
snp3D : Map Gene to Disease65993
BioCentury BCIQMRPS34
ClinGenMRPS34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65993
Chemical/Pharm GKB GenePA31021
Clinical trialMRPS34
Miscellaneous
canSAR (ICR)MRPS34 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS34
EVEXMRPS34
GoPubMedMRPS34
iHOPMRPS34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:33:51 CET 2017

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