Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRPS34 (mitochondrial ribosomal protein S34)

Identity

Alias (NCBI)COXPD32
MRP-S12
MRP-S34
MRPS12
HGNC (Hugo) MRPS34
HGNC Alias symbMRP-S12
MGC2616
LocusID (NCBI) 65993
Atlas_Id 70489
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1771895 and ends at 1773134 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPS34 (16p13.3) / OTX1 (2p15)MRPS34 (16p13.3) / PRKDC (8q11.21)MRPS34 (16p13.3) / ST6GAL1 (3q27.3)
SLC38A5 (Xp11.23) / MRPS34 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MRPS34   16618
Cards
Entrez_Gene (NCBI)MRPS34    mitochondrial ribosomal protein S34
AliasesCOXPD32; MRP-S12; MRP-S34; MRPS12
GeneCards (Weizmann)MRPS34
Ensembl hg19 (Hinxton)ENSG00000074071 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074071 [Gene_View]  ENSG00000074071 [Sequence]  chr16:1771895-1773134 [Contig_View]  MRPS34 [Vega]
ICGC DataPortalENSG00000074071
TCGA cBioPortalMRPS34
AceView (NCBI)MRPS34
Genatlas (Paris)MRPS34
SOURCE (Princeton)MRPS34
Genetics Home Reference (NIH)MRPS34
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS34  -     chr16:1771895-1773134 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS34  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathMRPS34 - 16p13.3 [CytoView hg19]  MRPS34 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000074071
Genome Data Viewer NCBIMRPS34 [Mapview hg19]  
OMIM611994   617664   
Gene and transcription
Genbank (Entrez)AV709743 BC001182 EF036486 HY279576
RefSeq transcript (Entrez)NM_001300900 NM_023936
Consensus coding sequences : CCDS (NCBI)MRPS34
Gene ExpressionMRPS34 [ NCBI-GEO ]   MRPS34 [ EBI - ARRAY_EXPRESS ]   MRPS34 [ SEEK ]   MRPS34 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS34 [ Firebrowse - Broad ]
GenevisibleExpression of MRPS34 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65993
GTEX Portal (Tissue expression)MRPS34
Human Protein AtlasENSG00000074071-MRPS34 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82930   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82930  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82930
PhosPhoSitePlusP82930
Domains : Interpro (EBI)MRP-S34   
Domain families : Pfam (Sanger)MRP-S34 (PF16053)   
Domain families : Pfam (NCBI)pfam16053   
Conserved Domain (NCBI)MRPS34
PDB (RSDB)3J9M    6NU2    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB Europe3J9M    6NU2    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (PDBSum)3J9M    6NU2    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
PDB (IMB)3J9M    6NU2    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
Structural Biology KnowledgeBase3J9M    6NU2    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SCOP (Structural Classification of Proteins)3J9M    6NU2    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
CATH (Classification of proteins structures)3J9M    6NU2    6RW4    6RW5    6VLZ    6VMI    6ZS9    6ZSA    6ZSB    6ZSC    6ZSD    6ZSE    6ZSG   
SuperfamilyP82930
AlphaFold pdb e-kbP82930   
Human Protein Atlas [tissue]ENSG00000074071-MRPS34 [tissue]
HPRD17599
Protein Interaction databases
DIP (DOE-UCLA)P82930
IntAct (EBI)P82930
BioGRIDMRPS34
STRING (EMBL)MRPS34
ZODIACMRPS34
Ontologies - Pathways
QuickGOP82930
Ontology : AmiGOstructural constituent of ribosome  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  mitochondrial translation  mitochondrial translation  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  mitochondrial translation  mitochondrial translation  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS34
Atlas of Cancer Signalling NetworkMRPS34
Wikipedia pathwaysMRPS34
Orthology - Evolution
OrthoDB65993
GeneTree (enSembl)ENSG00000074071
Phylogenetic Trees/Animal Genes : TreeFamMRPS34
Homologs : HomoloGeneMRPS34
Homology/Alignments : Family Browser (UCSC)MRPS34
Gene fusions - Rearrangements
Fusion : QuiverMRPS34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS34
dbVarMRPS34
ClinVarMRPS34
MonarchMRPS34
1000_GenomesMRPS34 
Exome Variant ServerMRPS34
GNOMAD BrowserENSG00000074071
Varsome BrowserMRPS34
ACMGMRPS34 variants
VarityP82930
Genomic Variants (DGV)MRPS34 [DGVbeta]
DECIPHERMRPS34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS34 
Mutations
ICGC Data PortalMRPS34 
TCGA Data PortalMRPS34 
Broad Tumor PortalMRPS34
OASIS PortalMRPS34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS34  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMRPS34
Mutations and Diseases : HGMDMRPS34
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMRPS34
DgiDB (Drug Gene Interaction Database)MRPS34
DoCM (Curated mutations)MRPS34
CIViC (Clinical Interpretations of Variants in Cancer)MRPS34
Cancer3DMRPS34
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611994    617664   
Orphanet
DisGeNETMRPS34
MedgenMRPS34
Genetic Testing Registry MRPS34
NextProtP82930 [Medical]
GENETestsMRPS34
Target ValidationMRPS34
Huge Navigator MRPS34 [HugePedia]
ClinGenMRPS34
Clinical trials, drugs, therapy
MyCancerGenomeMRPS34
Protein Interactions : CTDMRPS34
Pharm GKB GenePA31021
PharosP82930
Clinical trialMRPS34
Miscellaneous
canSAR (ICR)MRPS34
HarmonizomeMRPS34
DataMed IndexMRPS34
Probes
Litterature
PubMed69 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMRPS34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:11:47 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.