Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MRPS34 (mitochondrial ribosomal protein S34)

Identity

Alias_symbol (synonym)MRP-S12
MGC2616
Other aliasMRP-S34
MRPS12
HGNC (Hugo) MRPS34
LocusID (NCBI) 65993
Atlas_Id 70489
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1771895 and ends at 1773139 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPS34 (16p13.3) / OTX1 (2p15)MRPS34 (16p13.3) / PRKDC (8q11.21)MRPS34 (16p13.3) / ST6GAL1 (3q27.3)
SLC38A5 (Xp11.23) / MRPS34 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS34   16618
Cards
Entrez_Gene (NCBI)MRPS34  65993  mitochondrial ribosomal protein S34
AliasesMRP-S12; MRP-S34; MRPS12
GeneCards (Weizmann)MRPS34
Ensembl hg19 (Hinxton)ENSG00000074071 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074071 [Gene_View]  chr16:1771895-1773139 [Contig_View]  MRPS34 [Vega]
ICGC DataPortalENSG00000074071
TCGA cBioPortalMRPS34
AceView (NCBI)MRPS34
Genatlas (Paris)MRPS34
WikiGenes65993
SOURCE (Princeton)MRPS34
Genetics Home Reference (NIH)MRPS34
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS34  -     chr16:1771895-1773139 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS34  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblMRPS34 - 16p13.3 [CytoView hg19]  MRPS34 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIMRPS34 [Mapview hg19]  MRPS34 [Mapview hg38]
OMIM611994   
Gene and transcription
Genbank (Entrez)AV709743 BC001182 EF036486 HY279576 JF432468
RefSeq transcript (Entrez)NM_001300900 NM_023936
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS34
Cluster EST : UnigeneHs.720388 [ NCBI ]
CGAP (NCI)Hs.720388
Alternative Splicing GalleryENSG00000074071
Gene ExpressionMRPS34 [ NCBI-GEO ]   MRPS34 [ EBI - ARRAY_EXPRESS ]   MRPS34 [ SEEK ]   MRPS34 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65993
GTEX Portal (Tissue expression)MRPS34
Human Protein AtlasENSG00000074071-MRPS34 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82930   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82930  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82930
Splice isoforms : SwissVarP82930
PhosPhoSitePlusP82930
Domains : Interpro (EBI)MRP-S34   
Domain families : Pfam (Sanger)MRP-S34 (PF16053)   
Domain families : Pfam (NCBI)pfam16053   
Conserved Domain (NCBI)MRPS34
DMDM Disease mutations65993
Blocks (Seattle)MRPS34
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyP82930
Human Protein Atlas [tissue]ENSG00000074071-MRPS34 [tissue]
Peptide AtlasP82930
HPRD17599
IPIIPI00169413   IPI00969207   IPI00983882   IPI00658155   
Protein Interaction databases
DIP (DOE-UCLA)P82930
IntAct (EBI)P82930
FunCoupENSG00000074071
BioGRIDMRPS34
STRING (EMBL)MRPS34
ZODIACMRPS34
Ontologies - Pathways
QuickGOP82930
Ontology : AmiGOstructural constituent of ribosome  mitochondrion  mitochondrial inner membrane  ribosome  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrion  mitochondrial inner membrane  ribosome  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
NDEx NetworkMRPS34
Atlas of Cancer Signalling NetworkMRPS34
Wikipedia pathwaysMRPS34
Orthology - Evolution
OrthoDB65993
GeneTree (enSembl)ENSG00000074071
Phylogenetic Trees/Animal Genes : TreeFamMRPS34
HOVERGENP82930
HOGENOMP82930
Homologs : HomoloGeneMRPS34
Homology/Alignments : Family Browser (UCSC)MRPS34
Gene fusions - Rearrangements
Fusion: Tumor Portal MRPS34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS34
dbVarMRPS34
ClinVarMRPS34
1000_GenomesMRPS34 
Exome Variant ServerMRPS34
ExAC (Exome Aggregation Consortium)ENSG00000074071
GNOMAD BrowserENSG00000074071
Genetic variants : HAPMAP65993
Genomic Variants (DGV)MRPS34 [DGVbeta]
DECIPHERMRPS34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS34 
Mutations
ICGC Data PortalMRPS34 
TCGA Data PortalMRPS34 
Broad Tumor PortalMRPS34
OASIS PortalMRPS34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS34
DgiDB (Drug Gene Interaction Database)MRPS34
DoCM (Curated mutations)MRPS34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS34 (select a term)
intoGenMRPS34
Cancer3DMRPS34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611994   
Orphanet
MedgenMRPS34
Genetic Testing Registry MRPS34
NextProtP82930 [Medical]
TSGene65993
GENETestsMRPS34
Target ValidationMRPS34
Huge Navigator MRPS34 [HugePedia]
snp3D : Map Gene to Disease65993
BioCentury BCIQMRPS34
ClinGenMRPS34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65993
Chemical/Pharm GKB GenePA31021
Clinical trialMRPS34
Miscellaneous
canSAR (ICR)MRPS34 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS34
EVEXMRPS34
GoPubMedMRPS34
iHOPMRPS34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:17:57 CET 2017

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