Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MRPS5 (mitochondrial ribosomal protein S5)

Identity

Alias_symbol (synonym)MRP-S5
S5mt
Other alias
HGNC (Hugo) MRPS5
LocusID (NCBI) 64969
Atlas_Id 70491
Location 2q11.1  [Link to chromosome band 2q11]
Location_base_pair Starts at 95085391 and ends at 95121557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD3D (11q23.3) / MRPS5 (2q11.1)MRPS5 (2q11.1) / STAT1 (2q32.2)PITPNM2 (12q24.31) / MRPS5 (2q11.1)
PRKAR2A (3p21.31) / MRPS5 (2q11.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS5   14498
Cards
Entrez_Gene (NCBI)MRPS5  64969  mitochondrial ribosomal protein S5
AliasesMRP-S5; S5mt
GeneCards (Weizmann)MRPS5
Ensembl hg19 (Hinxton)ENSG00000144029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144029 [Gene_View]  chr2:95085391-95121557 [Contig_View]  MRPS5 [Vega]
ICGC DataPortalENSG00000144029
TCGA cBioPortalMRPS5
AceView (NCBI)MRPS5
Genatlas (Paris)MRPS5
WikiGenes64969
SOURCE (Princeton)MRPS5
Genetics Home Reference (NIH)MRPS5
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS5  -     chr2:95085391-95121557 -  2q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS5  -     2q11.1   [Description]    (hg19-Feb_2009)
EnsemblMRPS5 - 2q11.1 [CytoView hg19]  MRPS5 - 2q11.1 [CytoView hg38]
Mapping of homologs : NCBIMRPS5 [Mapview hg19]  MRPS5 [Mapview hg38]
OMIM611972   
Gene and transcription
Genbank (Entrez)AB049940 AK055390 AK058160 AK124892 AK295812
RefSeq transcript (Entrez)NM_001321995 NM_001321996 NM_001321997 NM_031902
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS5
Cluster EST : UnigeneHs.655259 [ NCBI ]
CGAP (NCI)Hs.655259
Alternative Splicing GalleryENSG00000144029
Gene ExpressionMRPS5 [ NCBI-GEO ]   MRPS5 [ EBI - ARRAY_EXPRESS ]   MRPS5 [ SEEK ]   MRPS5 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64969
GTEX Portal (Tissue expression)MRPS5
Human Protein AtlasENSG00000144029-MRPS5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82675   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82675  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82675
Splice isoforms : SwissVarP82675
PhosPhoSitePlusP82675
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S5 (PS00585)    S5_DSRBD (PS50881)   
Domains : Interpro (EBI)dsRBD_dom    Ribosomal_S5    Ribosomal_S5_C    Ribosomal_S5_D2-typ_fold    Ribosomal_S5_D2-typ_fold_subgr    Ribosomal_S5_N    Ribosomal_S5_N_CS   
Domain families : Pfam (Sanger)Ribosomal_S5 (PF00333)    Ribosomal_S5_C (PF03719)   
Domain families : Pfam (NCBI)pfam00333    pfam03719   
Conserved Domain (NCBI)MRPS5
DMDM Disease mutations64969
Blocks (Seattle)MRPS5
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyP82675
Human Protein Atlas [tissue]ENSG00000144029-MRPS5 [tissue]
Peptide AtlasP82675
HPRD10099
IPIIPI00169400   IPI00215872   
Protein Interaction databases
DIP (DOE-UCLA)P82675
IntAct (EBI)P82675
FunCoupENSG00000144029
BioGRIDMRPS5
STRING (EMBL)MRPS5
ZODIACMRPS5
Ontologies - Pathways
QuickGOP82675
Ontology : AmiGORNA binding  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  cytosolic small ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  cytosolic small ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPS5
Atlas of Cancer Signalling NetworkMRPS5
Wikipedia pathwaysMRPS5
Orthology - Evolution
OrthoDB64969
GeneTree (enSembl)ENSG00000144029
Phylogenetic Trees/Animal Genes : TreeFamMRPS5
HOVERGENP82675
HOGENOMP82675
Homologs : HomoloGeneMRPS5
Homology/Alignments : Family Browser (UCSC)MRPS5
Gene fusions - Rearrangements
Tumor Fusion PortalMRPS5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS5
dbVarMRPS5
ClinVarMRPS5
1000_GenomesMRPS5 
Exome Variant ServerMRPS5
ExAC (Exome Aggregation Consortium)ENSG00000144029
GNOMAD BrowserENSG00000144029
Genetic variants : HAPMAP64969
Genomic Variants (DGV)MRPS5 [DGVbeta]
DECIPHERMRPS5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS5 
Mutations
ICGC Data PortalMRPS5 
TCGA Data PortalMRPS5 
Broad Tumor PortalMRPS5
OASIS PortalMRPS5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS5
DgiDB (Drug Gene Interaction Database)MRPS5
DoCM (Curated mutations)MRPS5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS5 (select a term)
intoGenMRPS5
Cancer3DMRPS5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611972   
Orphanet
DisGeNETMRPS5
MedgenMRPS5
Genetic Testing Registry MRPS5
NextProtP82675 [Medical]
TSGene64969
GENETestsMRPS5
Target ValidationMRPS5
Huge Navigator MRPS5 [HugePedia]
snp3D : Map Gene to Disease64969
BioCentury BCIQMRPS5
ClinGenMRPS5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64969
Chemical/Pharm GKB GenePA31024
Clinical trialMRPS5
Miscellaneous
canSAR (ICR)MRPS5 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS5
EVEXMRPS5
GoPubMedMRPS5
iHOPMRPS5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:49 CET 2017

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