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MRPS7 (mitochondrial ribosomal protein S7)

Identity

Alias_symbol (synonym)MRP-S
RP-S7
RPMS7
Other aliasMRP-S7
S7mt
bMRP27a
HGNC (Hugo) MRPS7
LocusID (NCBI) 51081
Atlas_Id 70493
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75261668 and ends at 75266376 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPS7 (17q25.1) / GGA3 (17q25.1)MRPS7 (17q25.1) / MRPS7 (17q25.1)RAC1 (7p22.1) / MRPS7 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS7   14499
Cards
Entrez_Gene (NCBI)MRPS7  51081  mitochondrial ribosomal protein S7
AliasesMRP-S; MRP-S7; RP-S7; RPMS7; 
S7mt; bMRP27a
GeneCards (Weizmann)MRPS7
Ensembl hg19 (Hinxton)ENSG00000125445 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125445 [Gene_View]  chr17:75261668-75266376 [Contig_View]  MRPS7 [Vega]
ICGC DataPortalENSG00000125445
TCGA cBioPortalMRPS7
AceView (NCBI)MRPS7
Genatlas (Paris)MRPS7
WikiGenes51081
SOURCE (Princeton)MRPS7
Genetics Home Reference (NIH)MRPS7
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS7  -     chr17:75261668-75266376 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS7  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblMRPS7 - 17q25.1 [CytoView hg19]  MRPS7 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIMRPS7 [Mapview hg19]  MRPS7 [Mapview hg38]
OMIM611974   
Gene and transcription
Genbank (Entrez)AF077042 AK222995 AK313854 BC000241 BC050641
RefSeq transcript (Entrez)NM_015971
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS7
Cluster EST : UnigeneHs.71787 [ NCBI ]
CGAP (NCI)Hs.71787
Alternative Splicing GalleryENSG00000125445
Gene ExpressionMRPS7 [ NCBI-GEO ]   MRPS7 [ EBI - ARRAY_EXPRESS ]   MRPS7 [ SEEK ]   MRPS7 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51081
GTEX Portal (Tissue expression)MRPS7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2R9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2R9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2R9
Splice isoforms : SwissVarQ9Y2R9
PhosPhoSitePlusQ9Y2R9
Domains : Interpro (EBI)Ribosomal_S5/S7    Ribosomal_S7_dom   
Domain families : Pfam (Sanger)Ribosomal_S7 (PF00177)   
Domain families : Pfam (NCBI)pfam00177   
Conserved Domain (NCBI)MRPS7
DMDM Disease mutations51081
Blocks (Seattle)MRPS7
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyQ9Y2R9
Human Protein AtlasENSG00000125445
Peptide AtlasQ9Y2R9
HPRD17601
IPIIPI00006440   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2R9
IntAct (EBI)Q9Y2R9
FunCoupENSG00000125445
BioGRIDMRPS7
STRING (EMBL)MRPS7
ZODIACMRPS7
Ontologies - Pathways
QuickGOQ9Y2R9
Ontology : AmiGORNA binding  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  mitochondrial translation  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPS7
Atlas of Cancer Signalling NetworkMRPS7
Wikipedia pathwaysMRPS7
Orthology - Evolution
OrthoDB51081
GeneTree (enSembl)ENSG00000125445
Phylogenetic Trees/Animal Genes : TreeFamMRPS7
HOVERGENQ9Y2R9
HOGENOMQ9Y2R9
Homologs : HomoloGeneMRPS7
Homology/Alignments : Family Browser (UCSC)MRPS7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS7
dbVarMRPS7
ClinVarMRPS7
1000_GenomesMRPS7 
Exome Variant ServerMRPS7
ExAC (Exome Aggregation Consortium)MRPS7 (select the gene name)
Genetic variants : HAPMAP51081
Genomic Variants (DGV)MRPS7 [DGVbeta]
DECIPHERMRPS7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS7 
Mutations
ICGC Data PortalMRPS7 
TCGA Data PortalMRPS7 
Broad Tumor PortalMRPS7
OASIS PortalMRPS7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS7
DgiDB (Drug Gene Interaction Database)MRPS7
DoCM (Curated mutations)MRPS7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS7 (select a term)
intoGenMRPS7
Cancer3DMRPS7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611974   
Orphanet23709   
MedgenMRPS7
Genetic Testing Registry MRPS7
NextProtQ9Y2R9 [Medical]
TSGene51081
GENETestsMRPS7
Huge Navigator MRPS7 [HugePedia]
snp3D : Map Gene to Disease51081
BioCentury BCIQMRPS7
ClinGenMRPS7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51081
Chemical/Pharm GKB GenePA31026
Clinical trialMRPS7
Miscellaneous
canSAR (ICR)MRPS7 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS7
EVEXMRPS7
GoPubMedMRPS7
iHOPMRPS7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:43:55 CEST 2017

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