Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MRPS9 (mitochondrial ribosomal protein S9)

Identity

Alias_symbol (synonym)RPMS9
MRP-S9
S9mt
Other alias
HGNC (Hugo) MRPS9
LocusID (NCBI) 64965
Atlas_Id 70494
Location 2q12.1  [Link to chromosome band 2q12]
Location_base_pair Starts at 105038025 and ends at 105099960 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPS9 (2q12.1) / CD2AP (6p12.3)MRPS9 (2q12.1) / CFAP46 (10q26.3)PRDM11 (11p11.2) / MRPS9 (2q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRPS9   14501
Cards
Entrez_Gene (NCBI)MRPS9  64965  mitochondrial ribosomal protein S9
AliasesMRP-S9; RPMS9; S9mt
GeneCards (Weizmann)MRPS9
Ensembl hg19 (Hinxton)ENSG00000135972 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135972 [Gene_View]  chr2:105038025-105099960 [Contig_View]  MRPS9 [Vega]
ICGC DataPortalENSG00000135972
TCGA cBioPortalMRPS9
AceView (NCBI)MRPS9
Genatlas (Paris)MRPS9
WikiGenes64965
SOURCE (Princeton)MRPS9
Genetics Home Reference (NIH)MRPS9
Genomic and cartography
GoldenPath hg38 (UCSC)MRPS9  -     chr2:105038025-105099960 +  2q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRPS9  -     2q12.1   [Description]    (hg19-Feb_2009)
EnsemblMRPS9 - 2q12.1 [CytoView hg19]  MRPS9 - 2q12.1 [CytoView hg38]
Mapping of homologs : NCBIMRPS9 [Mapview hg19]  MRPS9 [Mapview hg38]
OMIM611975   
Gene and transcription
Genbank (Entrez)AK001451 AK130078 AV729381 BC036575 BC047784
RefSeq transcript (Entrez)NM_182640
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRPS9
Cluster EST : UnigeneHs.590900 [ NCBI ]
CGAP (NCI)Hs.590900
Alternative Splicing GalleryENSG00000135972
Gene ExpressionMRPS9 [ NCBI-GEO ]   MRPS9 [ EBI - ARRAY_EXPRESS ]   MRPS9 [ SEEK ]   MRPS9 [ MEM ]
Gene Expression Viewer (FireBrowse)MRPS9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64965
GTEX Portal (Tissue expression)MRPS9
Human Protein AtlasENSG00000135972-MRPS9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82933   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82933  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82933
Splice isoforms : SwissVarP82933
PhosPhoSitePlusP82933
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S9 (PS00360)   
Domains : Interpro (EBI)Ribosomal_S5_D2-typ_fold    Ribosomal_S5_D2-typ_fold_subgr    Ribosomal_S9    Ribosomal_S9_CS   
Domain families : Pfam (Sanger)Ribosomal_S9 (PF00380)   
Domain families : Pfam (NCBI)pfam00380   
Conserved Domain (NCBI)MRPS9
DMDM Disease mutations64965
Blocks (Seattle)MRPS9
PDB (SRS)3J9M   
PDB (PDBSum)3J9M   
PDB (IMB)3J9M   
PDB (RSDB)3J9M   
Structural Biology KnowledgeBase3J9M   
SCOP (Structural Classification of Proteins)3J9M   
CATH (Classification of proteins structures)3J9M   
SuperfamilyP82933
Human Protein Atlas [tissue]ENSG00000135972-MRPS9 [tissue]
Peptide AtlasP82933
HPRD17602
IPIIPI00641924   IPI00916714   
Protein Interaction databases
DIP (DOE-UCLA)P82933
IntAct (EBI)P82933
FunCoupENSG00000135972
BioGRIDMRPS9
STRING (EMBL)MRPS9
ZODIACMRPS9
Ontologies - Pathways
QuickGOP82933
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  structural constituent of ribosome  protein binding  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  DNA damage response, detection of DNA damage  mitochondrial translational elongation  mitochondrial translational termination  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  structural constituent of ribosome  protein binding  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  translation  DNA damage response, detection of DNA damage  mitochondrial translational elongation  mitochondrial translational termination  
Pathways : KEGGRibosome   
NDEx NetworkMRPS9
Atlas of Cancer Signalling NetworkMRPS9
Wikipedia pathwaysMRPS9
Orthology - Evolution
OrthoDB64965
GeneTree (enSembl)ENSG00000135972
Phylogenetic Trees/Animal Genes : TreeFamMRPS9
HOVERGENP82933
HOGENOMP82933
Homologs : HomoloGeneMRPS9
Homology/Alignments : Family Browser (UCSC)MRPS9
Gene fusions - Rearrangements
Fusion: Tumor Portal MRPS9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRPS9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRPS9
dbVarMRPS9
ClinVarMRPS9
1000_GenomesMRPS9 
Exome Variant ServerMRPS9
ExAC (Exome Aggregation Consortium)ENSG00000135972
GNOMAD BrowserENSG00000135972
Genetic variants : HAPMAP64965
Genomic Variants (DGV)MRPS9 [DGVbeta]
DECIPHERMRPS9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRPS9 
Mutations
ICGC Data PortalMRPS9 
TCGA Data PortalMRPS9 
Broad Tumor PortalMRPS9
OASIS PortalMRPS9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRPS9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRPS9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MRPS9
DgiDB (Drug Gene Interaction Database)MRPS9
DoCM (Curated mutations)MRPS9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRPS9 (select a term)
intoGenMRPS9
Cancer3DMRPS9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611975   
Orphanet
MedgenMRPS9
Genetic Testing Registry MRPS9
NextProtP82933 [Medical]
TSGene64965
GENETestsMRPS9
Target ValidationMRPS9
Huge Navigator MRPS9 [HugePedia]
snp3D : Map Gene to Disease64965
BioCentury BCIQMRPS9
ClinGenMRPS9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64965
Chemical/Pharm GKB GenePA31028
Clinical trialMRPS9
Miscellaneous
canSAR (ICR)MRPS9 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRPS9
EVEXMRPS9
GoPubMedMRPS9
iHOPMRPS9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:17:58 CET 2017

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