Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MRTO4 (MRT4 homolog, ribosome maturation factor)

Identity

Alias_namesC1orf33
chromosome 1 open reading frame 33
MRT4, mRNA turnover 4, homolog (S. cerevisiae)
mRNA turnover 4 homolog (S. cerevisiae)
Alias_symbol (synonym)dJ657E11.4
MRT4
Other alias
HGNC (Hugo) MRTO4
LocusID (NCBI) 51154
Atlas_Id 70497
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 19251581 and ends at 19260128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRTO4 (1p36.13) / CD55 (1q32.2)NR2F2 (15q26.2) / MRTO4 (1p36.13)TAX1BP1 (7p15.2) / MRTO4 (1p36.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MRTO4   18477
Cards
Entrez_Gene (NCBI)MRTO4  51154  MRT4 homolog, ribosome maturation factor
AliasesC1orf33; MRT4; dJ657E11.4
GeneCards (Weizmann)MRTO4
Ensembl hg19 (Hinxton)ENSG00000053372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000053372 [Gene_View]  chr1:19251581-19260128 [Contig_View]  MRTO4 [Vega]
ICGC DataPortalENSG00000053372
TCGA cBioPortalMRTO4
AceView (NCBI)MRTO4
Genatlas (Paris)MRTO4
WikiGenes51154
SOURCE (Princeton)MRTO4
Genetics Home Reference (NIH)MRTO4
Genomic and cartography
GoldenPath hg38 (UCSC)MRTO4  -     chr1:19251581-19260128 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MRTO4  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblMRTO4 - 1p36.13 [CytoView hg19]  MRTO4 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIMRTO4 [Mapview hg19]  MRTO4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF173378 AK024227 AK027569 AK295328 AY303790
RefSeq transcript (Entrez)NM_016183
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MRTO4
Cluster EST : UnigeneHs.463797 [ NCBI ]
CGAP (NCI)Hs.463797
Alternative Splicing GalleryENSG00000053372
Gene ExpressionMRTO4 [ NCBI-GEO ]   MRTO4 [ EBI - ARRAY_EXPRESS ]   MRTO4 [ SEEK ]   MRTO4 [ MEM ]
Gene Expression Viewer (FireBrowse)MRTO4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51154
GTEX Portal (Tissue expression)MRTO4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKD2
Splice isoforms : SwissVarQ9UKD2
PhosPhoSitePlusQ9UKD2
Domains : Interpro (EBI)Mrt4    Ribosomal_L10P   
Domain families : Pfam (Sanger)Ribosomal_L10 (PF00466)   
Domain families : Pfam (NCBI)pfam00466   
Conserved Domain (NCBI)MRTO4
DMDM Disease mutations51154
Blocks (Seattle)MRTO4
SuperfamilyQ9UKD2
Human Protein AtlasENSG00000053372
Peptide AtlasQ9UKD2
HPRD12725
IPIIPI00106491   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKD2
IntAct (EBI)Q9UKD2
FunCoupENSG00000053372
BioGRIDMRTO4
STRING (EMBL)MRTO4
ZODIACMRTO4
Ontologies - Pathways
QuickGOQ9UKD2
Ontology : AmiGOribosomal large subunit assembly  nuclear-transcribed mRNA catabolic process  RNA binding  protein binding  nucleolus  cytoplasm  rRNA processing  
Ontology : EGO-EBIribosomal large subunit assembly  nuclear-transcribed mRNA catabolic process  RNA binding  protein binding  nucleolus  cytoplasm  rRNA processing  
NDEx NetworkMRTO4
Atlas of Cancer Signalling NetworkMRTO4
Wikipedia pathwaysMRTO4
Orthology - Evolution
OrthoDB51154
GeneTree (enSembl)ENSG00000053372
Phylogenetic Trees/Animal Genes : TreeFamMRTO4
HOVERGENQ9UKD2
HOGENOMQ9UKD2
Homologs : HomoloGeneMRTO4
Homology/Alignments : Family Browser (UCSC)MRTO4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMRTO4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MRTO4
dbVarMRTO4
ClinVarMRTO4
1000_GenomesMRTO4 
Exome Variant ServerMRTO4
ExAC (Exome Aggregation Consortium)MRTO4 (select the gene name)
Genetic variants : HAPMAP51154
Genomic Variants (DGV)MRTO4 [DGVbeta]
DECIPHERMRTO4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMRTO4 
Mutations
ICGC Data PortalMRTO4 
TCGA Data PortalMRTO4 
Broad Tumor PortalMRTO4
OASIS PortalMRTO4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMRTO4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMRTO4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MRTO4
DgiDB (Drug Gene Interaction Database)MRTO4
DoCM (Curated mutations)MRTO4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MRTO4 (select a term)
intoGenMRTO4
Cancer3DMRTO4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMRTO4
Genetic Testing Registry MRTO4
NextProtQ9UKD2 [Medical]
TSGene51154
GENETestsMRTO4
Target ValidationMRTO4
Huge Navigator MRTO4 [HugePedia]
snp3D : Map Gene to Disease51154
BioCentury BCIQMRTO4
ClinGenMRTO4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51154
Chemical/Pharm GKB GenePA162396216
Clinical trialMRTO4
Miscellaneous
canSAR (ICR)MRTO4 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMRTO4
EVEXMRTO4
GoPubMedMRTO4
iHOPMRTO4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:31:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.