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MS4A10 (membrane spanning 4-domains A10)

Identity

Alias_namesmembrane-spanning 4-domains, subfamily A, member 10
Alias_symbol (synonym)CD20L7
MS4A9
Other alias
HGNC (Hugo) MS4A10
LocusID (NCBI) 341116
Atlas_Id 70499
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60785348 and ends at 60801305 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MS4A10   13368
Cards
Entrez_Gene (NCBI)MS4A10  341116  membrane spanning 4-domains A10
AliasesCD20L7; MS4A9
GeneCards (Weizmann)MS4A10
Ensembl hg19 (Hinxton)ENSG00000172689 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172689 [Gene_View]  chr11:60785348-60801305 [Contig_View]  MS4A10 [Vega]
ICGC DataPortalENSG00000172689
TCGA cBioPortalMS4A10
AceView (NCBI)MS4A10
Genatlas (Paris)MS4A10
WikiGenes341116
SOURCE (Princeton)MS4A10
Genetics Home Reference (NIH)MS4A10
Genomic and cartography
GoldenPath hg38 (UCSC)MS4A10  -     chr11:60785348-60801305 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MS4A10  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblMS4A10 - 11q12.2 [CytoView hg19]  MS4A10 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A10 [Mapview hg19]  MS4A10 [Mapview hg38]
OMIM608403   
Gene and transcription
Genbank (Entrez)AK122633 BC137259 BC137263
RefSeq transcript (Entrez)NM_206893
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MS4A10
Cluster EST : UnigeneHs.591956 [ NCBI ]
CGAP (NCI)Hs.591956
Alternative Splicing GalleryENSG00000172689
Gene ExpressionMS4A10 [ NCBI-GEO ]   MS4A10 [ EBI - ARRAY_EXPRESS ]   MS4A10 [ SEEK ]   MS4A10 [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341116
GTEX Portal (Tissue expression)MS4A10
Human Protein AtlasENSG00000172689-MS4A10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PG2
Splice isoforms : SwissVarQ96PG2
PhosPhoSitePlusQ96PG2
Domains : Interpro (EBI)CD20-like    MS4A   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A10
DMDM Disease mutations341116
Blocks (Seattle)MS4A10
SuperfamilyQ96PG2
Human Protein Atlas [tissue]ENSG00000172689-MS4A10 [tissue]
Peptide AtlasQ96PG2
HPRD16330
IPIIPI00163227   
Protein Interaction databases
DIP (DOE-UCLA)Q96PG2
IntAct (EBI)Q96PG2
FunCoupENSG00000172689
BioGRIDMS4A10
STRING (EMBL)MS4A10
ZODIACMS4A10
Ontologies - Pathways
QuickGOQ96PG2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMS4A10
Atlas of Cancer Signalling NetworkMS4A10
Wikipedia pathwaysMS4A10
Orthology - Evolution
OrthoDB341116
GeneTree (enSembl)ENSG00000172689
Phylogenetic Trees/Animal Genes : TreeFamMS4A10
HOVERGENQ96PG2
HOGENOMQ96PG2
Homologs : HomoloGeneMS4A10
Homology/Alignments : Family Browser (UCSC)MS4A10
Gene fusions - Rearrangements
Tumor Fusion PortalMS4A10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A10
dbVarMS4A10
ClinVarMS4A10
1000_GenomesMS4A10 
Exome Variant ServerMS4A10
ExAC (Exome Aggregation Consortium)ENSG00000172689
GNOMAD BrowserENSG00000172689
Genetic variants : HAPMAP341116
Genomic Variants (DGV)MS4A10 [DGVbeta]
DECIPHERMS4A10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMS4A10 
Mutations
ICGC Data PortalMS4A10 
TCGA Data PortalMS4A10 
Broad Tumor PortalMS4A10
OASIS PortalMS4A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A10
DgiDB (Drug Gene Interaction Database)MS4A10
DoCM (Curated mutations)MS4A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A10 (select a term)
intoGenMS4A10
Cancer3DMS4A10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608403   
Orphanet
DisGeNETMS4A10
MedgenMS4A10
Genetic Testing Registry MS4A10
NextProtQ96PG2 [Medical]
TSGene341116
GENETestsMS4A10
Target ValidationMS4A10
Huge Navigator MS4A10 [HugePedia]
snp3D : Map Gene to Disease341116
BioCentury BCIQMS4A10
ClinGenMS4A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341116
Chemical/Pharm GKB GenePA31110
Clinical trialMS4A10
Miscellaneous
canSAR (ICR)MS4A10 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A10
EVEXMS4A10
GoPubMedMS4A10
iHOPMS4A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:10 CET 2017

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