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MS4A12 (membrane spanning 4-domains A12)

Identity

Alias_namesmembrane-spanning 4-domains
Alias_symbol (synonym)Ms4a10
FLJ20217
Other alias
HGNC (Hugo) MS4A12
LocusID (NCBI) 54860
Atlas_Id 52808
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60492778 and ends at 60507428 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NKAIN2 (6q22.31) / MS4A12 (11q12.2)NKAIN2 6q22.31 / MS4A12 11q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;11)(q21;q12) NKAIN2/MS4A12

External links

Nomenclature
HGNC (Hugo)MS4A12   13370
Cards
Entrez_Gene (NCBI)MS4A12  54860  membrane spanning 4-domains A12
AliasesMs4a10
GeneCards (Weizmann)MS4A12
Ensembl hg19 (Hinxton)ENSG00000071203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000071203 [Gene_View]  ENSG00000071203 [Sequence]  chr11:60492778-60507428 [Contig_View]  MS4A12 [Vega]
ICGC DataPortalENSG00000071203
TCGA cBioPortalMS4A12
AceView (NCBI)MS4A12
Genatlas (Paris)MS4A12
WikiGenes54860
SOURCE (Princeton)MS4A12
Genetics Home Reference (NIH)MS4A12
Genomic and cartography
GoldenPath hg38 (UCSC)MS4A12  -     chr11:60492778-60507428 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MS4A12  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblMS4A12 - 11q12.2 [CytoView hg19]  MS4A12 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A12 [Mapview hg19]  MS4A12 [Mapview hg38]
OMIM606550   
Gene and transcription
Genbank (Entrez)AK000224 AK309275 BC029793 BP262076 BP262976
RefSeq transcript (Entrez)NM_001164470 NM_017716
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MS4A12
Cluster EST : UnigeneHs.272789 [ NCBI ]
CGAP (NCI)Hs.272789
Alternative Splicing GalleryENSG00000071203
Gene ExpressionMS4A12 [ NCBI-GEO ]   MS4A12 [ EBI - ARRAY_EXPRESS ]   MS4A12 [ SEEK ]   MS4A12 [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54860
GTEX Portal (Tissue expression)MS4A12
Human Protein AtlasENSG00000071203-MS4A12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXJ0
Splice isoforms : SwissVarQ9NXJ0
PhosPhoSitePlusQ9NXJ0
Domains : Interpro (EBI)CD20-like    MS4A   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A12
DMDM Disease mutations54860
Blocks (Seattle)MS4A12
SuperfamilyQ9NXJ0
Human Protein Atlas [tissue]ENSG00000071203-MS4A12 [tissue]
Peptide AtlasQ9NXJ0
HPRD08410
IPIIPI00302076   IPI00943710   IPI00984804   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXJ0
IntAct (EBI)Q9NXJ0
FunCoupENSG00000071203
BioGRIDMS4A12
STRING (EMBL)MS4A12
ZODIACMS4A12
Ontologies - Pathways
QuickGOQ9NXJ0
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkMS4A12
Atlas of Cancer Signalling NetworkMS4A12
Wikipedia pathwaysMS4A12
Orthology - Evolution
OrthoDB54860
GeneTree (enSembl)ENSG00000071203
Phylogenetic Trees/Animal Genes : TreeFamMS4A12
HOGENOMQ9NXJ0
Homologs : HomoloGeneMS4A12
Homology/Alignments : Family Browser (UCSC)MS4A12
Gene fusions - Rearrangements
Fusion : MitelmanNKAIN2/MS4A12 [6q22.31/11q12.2]  [t(6;11)(q21;q12)]  
Fusion PortalNKAIN2 6q22.31 MS4A12 11q12.2 LUSC
Fusion : QuiverMS4A12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A12
dbVarMS4A12
ClinVarMS4A12
1000_GenomesMS4A12 
Exome Variant ServerMS4A12
ExAC (Exome Aggregation Consortium)ENSG00000071203
GNOMAD BrowserENSG00000071203
Varsome BrowserMS4A12
Genetic variants : HAPMAP54860
Genomic Variants (DGV)MS4A12 [DGVbeta]
DECIPHERMS4A12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMS4A12 
Mutations
ICGC Data PortalMS4A12 
TCGA Data PortalMS4A12 
Broad Tumor PortalMS4A12
OASIS PortalMS4A12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A12
DgiDB (Drug Gene Interaction Database)MS4A12
DoCM (Curated mutations)MS4A12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A12 (select a term)
intoGenMS4A12
Cancer3DMS4A12(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606550   
Orphanet
DisGeNETMS4A12
MedgenMS4A12
Genetic Testing Registry MS4A12
NextProtQ9NXJ0 [Medical]
TSGene54860
GENETestsMS4A12
Target ValidationMS4A12
Huge Navigator MS4A12 [HugePedia]
snp3D : Map Gene to Disease54860
BioCentury BCIQMS4A12
ClinGenMS4A12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54860
Chemical/Pharm GKB GenePA134971353
Clinical trialMS4A12
Miscellaneous
canSAR (ICR)MS4A12 (select the gene name)
DataMed IndexMS4A12
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A12
EVEXMS4A12
GoPubMedMS4A12
iHOPMS4A12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 17 18:26:10 CET 2019
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