Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MS4A13 (membrane spanning 4-domains A13)

Identity

Alias_namesmembrane-spanning 4-domains, subfamily A, member 13
Other alias-
HGNC (Hugo) MS4A13
LocusID (NCBI) 503497
Atlas_Id 70500
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60515413 and ends at 60542718 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MS4A13   16674
Cards
Entrez_Gene (NCBI)MS4A13  503497  membrane spanning 4-domains A13
Aliases
GeneCards (Weizmann)MS4A13
Ensembl hg19 (Hinxton)ENSG00000204979 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204979 [Gene_View]  chr11:60515413-60542718 [Contig_View]  MS4A13 [Vega]
ICGC DataPortalENSG00000204979
TCGA cBioPortalMS4A13
AceView (NCBI)MS4A13
Genatlas (Paris)MS4A13
WikiGenes503497
SOURCE (Princeton)MS4A13
Genetics Home Reference (NIH)MS4A13
Genomic and cartography
GoldenPath hg38 (UCSC)MS4A13  -     chr11:60515413-60542718 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MS4A13  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblMS4A13 - 11q12.2 [CytoView hg19]  MS4A13 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A13 [Mapview hg19]  MS4A13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA431602 AY324188 AY324189 AY324190 BC140799
RefSeq transcript (Entrez)NM_001012417 NM_001100909 NM_001278320
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MS4A13
Cluster EST : UnigeneHs.523704 [ NCBI ]
CGAP (NCI)Hs.523704
Alternative Splicing GalleryENSG00000204979
Gene ExpressionMS4A13 [ NCBI-GEO ]   MS4A13 [ EBI - ARRAY_EXPRESS ]   MS4A13 [ SEEK ]   MS4A13 [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)503497
GTEX Portal (Tissue expression)MS4A13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5J8X5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5J8X5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5J8X5
Splice isoforms : SwissVarQ5J8X5
PhosPhoSitePlusQ5J8X5
Domains : Interpro (EBI)MS4A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MS4A13
DMDM Disease mutations503497
Blocks (Seattle)MS4A13
SuperfamilyQ5J8X5
Human Protein AtlasENSG00000204979
Peptide AtlasQ5J8X5
HPRD17604
IPIIPI00553198   IPI00552989   IPI00878528   IPI00922303   
Protein Interaction databases
DIP (DOE-UCLA)Q5J8X5
IntAct (EBI)Q5J8X5
FunCoupENSG00000204979
BioGRIDMS4A13
STRING (EMBL)MS4A13
ZODIACMS4A13
Ontologies - Pathways
QuickGOQ5J8X5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMS4A13
Atlas of Cancer Signalling NetworkMS4A13
Wikipedia pathwaysMS4A13
Orthology - Evolution
OrthoDB503497
GeneTree (enSembl)ENSG00000204979
Phylogenetic Trees/Animal Genes : TreeFamMS4A13
HOVERGENQ5J8X5
HOGENOMQ5J8X5
Homologs : HomoloGeneMS4A13
Homology/Alignments : Family Browser (UCSC)MS4A13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A13
dbVarMS4A13
ClinVarMS4A13
1000_GenomesMS4A13 
Exome Variant ServerMS4A13
ExAC (Exome Aggregation Consortium)MS4A13 (select the gene name)
Genetic variants : HAPMAP503497
Genomic Variants (DGV)MS4A13 [DGVbeta]
DECIPHERMS4A13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMS4A13 
Mutations
ICGC Data PortalMS4A13 
TCGA Data PortalMS4A13 
Broad Tumor PortalMS4A13
OASIS PortalMS4A13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A13
DgiDB (Drug Gene Interaction Database)MS4A13
DoCM (Curated mutations)MS4A13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A13 (select a term)
intoGenMS4A13
Cancer3DMS4A13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMS4A13
Genetic Testing Registry MS4A13
NextProtQ5J8X5 [Medical]
TSGene503497
GENETestsMS4A13
Huge Navigator MS4A13 [HugePedia]
snp3D : Map Gene to Disease503497
BioCentury BCIQMS4A13
ClinGenMS4A13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD503497
Chemical/Pharm GKB GenePA142671314
Clinical trialMS4A13
Miscellaneous
canSAR (ICR)MS4A13 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A13
EVEXMS4A13
GoPubMedMS4A13
iHOPMS4A13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:43:57 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.