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MS4A14 (membrane spanning 4-domains A14)

Identity

Alias_namesMS4A16
membrane-spanning 4-domains, subfamily A, member 16
membrane-spanning 4-domains, subfamily A, member 14
Alias_symbol (synonym)NYD-SP21
FLJ32856
DKFZp434H092
Other alias
HGNC (Hugo) MS4A14
LocusID (NCBI) 84689
Atlas_Id 70501
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60396014 and ends at 60417755 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MS4A14   30706
Cards
Entrez_Gene (NCBI)MS4A14  84689  membrane spanning 4-domains A14
AliasesMS4A16; NYD-SP21
GeneCards (Weizmann)MS4A14
Ensembl hg19 (Hinxton)ENSG00000166928 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166928 [Gene_View]  chr11:60396014-60417755 [Contig_View]  MS4A14 [Vega]
ICGC DataPortalENSG00000166928
TCGA cBioPortalMS4A14
AceView (NCBI)MS4A14
Genatlas (Paris)MS4A14
WikiGenes84689
SOURCE (Princeton)MS4A14
Genetics Home Reference (NIH)MS4A14
Genomic and cartography
GoldenPath hg38 (UCSC)MS4A14  -     chr11:60396014-60417755 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MS4A14  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblMS4A14 - 11q12.2 [CytoView hg19]  MS4A14 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A14 [Mapview hg19]  MS4A14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF367473 AK057418 AK314674 AL137391 AY094610
RefSeq transcript (Entrez)NM_001079692 NM_001261827 NM_001261828 NM_032597
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MS4A14
Cluster EST : UnigeneHs.709736 [ NCBI ]
CGAP (NCI)Hs.709736
Alternative Splicing GalleryENSG00000166928
Gene ExpressionMS4A14 [ NCBI-GEO ]   MS4A14 [ EBI - ARRAY_EXPRESS ]   MS4A14 [ SEEK ]   MS4A14 [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84689
GTEX Portal (Tissue expression)MS4A14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JA4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JA4
Splice isoforms : SwissVarQ96JA4
PhosPhoSitePlusQ96JA4
Domains : Interpro (EBI)CD20-like    MS4A   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A14
DMDM Disease mutations84689
Blocks (Seattle)MS4A14
SuperfamilyQ96JA4
Human Protein AtlasENSG00000166928
Peptide AtlasQ96JA4
HPRD14863
IPIIPI00064014   IPI00816529   IPI00984779   IPI00975841   IPI00976524   IPI00977017   IPI00978931   IPI00984685   IPI00981638   
Protein Interaction databases
DIP (DOE-UCLA)Q96JA4
IntAct (EBI)Q96JA4
FunCoupENSG00000166928
BioGRIDMS4A14
STRING (EMBL)MS4A14
ZODIACMS4A14
Ontologies - Pathways
QuickGOQ96JA4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMS4A14
Atlas of Cancer Signalling NetworkMS4A14
Wikipedia pathwaysMS4A14
Orthology - Evolution
OrthoDB84689
GeneTree (enSembl)ENSG00000166928
Phylogenetic Trees/Animal Genes : TreeFamMS4A14
HOVERGENQ96JA4
HOGENOMQ96JA4
Homologs : HomoloGeneMS4A14
Homology/Alignments : Family Browser (UCSC)MS4A14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A14
dbVarMS4A14
ClinVarMS4A14
1000_GenomesMS4A14 
Exome Variant ServerMS4A14
ExAC (Exome Aggregation Consortium)MS4A14 (select the gene name)
Genetic variants : HAPMAP84689
Genomic Variants (DGV)MS4A14 [DGVbeta]
DECIPHERMS4A14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMS4A14 
Mutations
ICGC Data PortalMS4A14 
TCGA Data PortalMS4A14 
Broad Tumor PortalMS4A14
OASIS PortalMS4A14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A14
DgiDB (Drug Gene Interaction Database)MS4A14
DoCM (Curated mutations)MS4A14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A14 (select a term)
intoGenMS4A14
Cancer3DMS4A14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMS4A14
Genetic Testing Registry MS4A14
NextProtQ96JA4 [Medical]
TSGene84689
GENETestsMS4A14
Target ValidationMS4A14
Huge Navigator MS4A14 [HugePedia]
snp3D : Map Gene to Disease84689
BioCentury BCIQMS4A14
ClinGenMS4A14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84689
Chemical/Pharm GKB GenePA162396237
Clinical trialMS4A14
Miscellaneous
canSAR (ICR)MS4A14 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A14
EVEXMS4A14
GoPubMedMS4A14
iHOPMS4A14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:19 CEST 2017

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