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MS4A15 (membrane-spanning 4-domains, subfamily A, member 15)

Identity

Alias_namesmembrane-spanning 4-domains, subfamily A, member 15
Other alias-
HGNC (Hugo) MS4A15
LocusID (NCBI) 219995
Atlas_Id 70502
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60524340 and ends at 60544204 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FHOD3 (18q12.2) / MS4A15 (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MS4A15   28573
Cards
Entrez_Gene (NCBI)MS4A15  219995  membrane-spanning 4-domains, subfamily A, member 15
Aliases
GeneCards (Weizmann)MS4A15
Ensembl hg19 (Hinxton)ENSG00000166961 [Gene_View]  chr11:60524340-60544204 [Contig_View]  MS4A15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166961 [Gene_View]  chr11:60524340-60544204 [Contig_View]  MS4A15 [Vega]
ICGC DataPortalENSG00000166961
TCGA cBioPortalMS4A15
AceView (NCBI)MS4A15
Genatlas (Paris)MS4A15
WikiGenes219995
SOURCE (Princeton)MS4A15
Genetics Home Reference (NIH)MS4A15
Genomic and cartography
GoldenPath hg19 (UCSC)MS4A15  -     chr11:60524340-60544204 +  11q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MS4A15  -     11q12.2   [Description]    (hg38-Dec_2013)
EnsemblMS4A15 - 11q12.2 [CytoView hg19]  MS4A15 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A15 [Mapview hg19]  MS4A15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091846 AK300233 AY584608 AY584609 BC031610
RefSeq transcript (Entrez)NM_001098835 NM_001278242 NM_152717
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)MS4A15
Cluster EST : UnigeneHs.207465 [ NCBI ]
CGAP (NCI)Hs.207465
Alternative Splicing GalleryENSG00000166961
Gene ExpressionMS4A15 [ NCBI-GEO ]   MS4A15 [ EBI - ARRAY_EXPRESS ]   MS4A15 [ SEEK ]   MS4A15 [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219995
GTEX Portal (Tissue expression)MS4A15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5U1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5U1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5U1
Splice isoforms : SwissVarQ8N5U1
PhosPhoSitePlusQ8N5U1
Domains : Interpro (EBI)CD20-like    MS4A   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A15
DMDM Disease mutations219995
Blocks (Seattle)MS4A15
SuperfamilyQ8N5U1
Human Protein AtlasENSG00000166961
Peptide AtlasQ8N5U1
HPRD17532
IPIIPI00885021   IPI00166915   IPI00852872   IPI00973844   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5U1
IntAct (EBI)Q8N5U1
FunCoupENSG00000166961
BioGRIDMS4A15
STRING (EMBL)MS4A15
ZODIACMS4A15
Ontologies - Pathways
QuickGOQ8N5U1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMS4A15
Atlas of Cancer Signalling NetworkMS4A15
Wikipedia pathwaysMS4A15
Orthology - Evolution
OrthoDB219995
GeneTree (enSembl)ENSG00000166961
Phylogenetic Trees/Animal Genes : TreeFamMS4A15
HOVERGENQ8N5U1
HOGENOMQ8N5U1
Homologs : HomoloGeneMS4A15
Homology/Alignments : Family Browser (UCSC)MS4A15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A15
dbVarMS4A15
ClinVarMS4A15
1000_GenomesMS4A15 
Exome Variant ServerMS4A15
ExAC (Exome Aggregation Consortium)MS4A15 (select the gene name)
Genetic variants : HAPMAP219995
Genomic Variants (DGV)MS4A15 [DGVbeta]
DECIPHER (Syndromes)11:60524340-60544204  ENSG00000166961
CONAN: Copy Number AnalysisMS4A15 
Mutations
ICGC Data PortalMS4A15 
TCGA Data PortalMS4A15 
Broad Tumor PortalMS4A15
OASIS PortalMS4A15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A15
DgiDB (Drug Gene Interaction Database)MS4A15
DoCM (Curated mutations)MS4A15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A15 (select a term)
intoGenMS4A15
Cancer3DMS4A15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMS4A15
Genetic Testing Registry MS4A15
NextProtQ8N5U1 [Medical]
TSGene219995
GENETestsMS4A15
Huge Navigator MS4A15 [HugePedia]
snp3D : Map Gene to Disease219995
BioCentury BCIQMS4A15
ClinGenMS4A15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219995
Chemical/Pharm GKB GenePA134959869
Clinical trialMS4A15
Miscellaneous
canSAR (ICR)MS4A15 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A15
EVEXMS4A15
GoPubMedMS4A15
iHOPMS4A15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:33:54 CET 2017

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