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MS4A18 (membrane spanning 4-domains A18)

Identity

Alias_namesmembrane-spanning 4-domains, subfamily A, member 18
Other alias-
HGNC (Hugo) MS4A18
LocusID (NCBI) 728588
Atlas_Id 70503
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60724009 and ends at 60744213 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MTA2 (11q12.3) / MS4A18 (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q12;q12) MTA2/MS4A18

External links

Nomenclature
HGNC (Hugo)MS4A18   37636
Cards
Entrez_Gene (NCBI)MS4A18  728588  membrane spanning 4-domains A18
Aliases
GeneCards (Weizmann)MS4A18
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:60724009-60744213 [Contig_View]  MS4A18 [Vega]
TCGA cBioPortalMS4A18
AceView (NCBI)MS4A18
Genatlas (Paris)MS4A18
WikiGenes728588
SOURCE (Princeton)MS4A18
Genetics Home Reference (NIH)MS4A18
Genomic and cartography
GoldenPath hg38 (UCSC)MS4A18  -     chr11:60724009-60744213 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MS4A18  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblMS4A18 - 11q12.2 [CytoView hg19]  MS4A18 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A18 [Mapview hg19]  MS4A18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB231761
RefSeq transcript (Entrez)NM_001310141
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MS4A18
Cluster EST : UnigeneHs.739039 [ NCBI ]
CGAP (NCI)Hs.739039
Gene ExpressionMS4A18 [ NCBI-GEO ]   MS4A18 [ EBI - ARRAY_EXPRESS ]   MS4A18 [ SEEK ]   MS4A18 [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728588
GTEX Portal (Tissue expression)MS4A18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3C1V0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3C1V0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3C1V0
Splice isoforms : SwissVarQ3C1V0
PhosPhoSitePlusQ3C1V0
Domains : Interpro (EBI)CD20-like    MS4A   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A18
DMDM Disease mutations728588
Blocks (Seattle)MS4A18
SuperfamilyQ3C1V0
Peptide AtlasQ3C1V0
IPIIPI00787437   
Protein Interaction databases
DIP (DOE-UCLA)Q3C1V0
IntAct (EBI)Q3C1V0
BioGRIDMS4A18
STRING (EMBL)MS4A18
ZODIACMS4A18
Ontologies - Pathways
QuickGOQ3C1V0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMS4A18
Atlas of Cancer Signalling NetworkMS4A18
Wikipedia pathwaysMS4A18
Orthology - Evolution
OrthoDB728588
Phylogenetic Trees/Animal Genes : TreeFamMS4A18
HOVERGENQ3C1V0
HOGENOMQ3C1V0
Homologs : HomoloGeneMS4A18
Homology/Alignments : Family Browser (UCSC)MS4A18
Gene fusions - Rearrangements
Fusion : QuiverMS4A18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A18
dbVarMS4A18
ClinVarMS4A18
1000_GenomesMS4A18 
Exome Variant ServerMS4A18
Varsome BrowserMS4A18
Genetic variants : HAPMAP728588
Genomic Variants (DGV)MS4A18 [DGVbeta]
DECIPHERMS4A18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMS4A18 
Mutations
ICGC Data PortalMS4A18 
TCGA Data PortalMS4A18 
Broad Tumor PortalMS4A18
OASIS PortalMS4A18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A18
DgiDB (Drug Gene Interaction Database)MS4A18
DoCM (Curated mutations)MS4A18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A18 (select a term)
intoGenMS4A18
Cancer3DMS4A18(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMS4A18
MedgenMS4A18
Genetic Testing Registry MS4A18
NextProtQ3C1V0 [Medical]
TSGene728588
GENETestsMS4A18
Target ValidationMS4A18
Huge Navigator MS4A18 [HugePedia]
snp3D : Map Gene to Disease728588
BioCentury BCIQMS4A18
ClinGenMS4A18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728588
Chemical/Pharm GKB GenePA165543479
Clinical trialMS4A18
Miscellaneous
canSAR (ICR)MS4A18 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A18
EVEXMS4A18
GoPubMedMS4A18
iHOPMS4A18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:18:44 CEST 2018
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