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MS4A3 (membrane spanning 4-domains A3)

Identity

Alias_namesCD20L
membrane-spanning 4-domains
Alias_symbol (synonym)HTM4
Other alias
HGNC (Hugo) MS4A3
LocusID (NCBI) 932
Atlas_Id 52250
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59824101 and ends at 59838588 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARNT2 (15q25.1) / MS4A3 (11q12.1)ARNT2 15q25.1 / MS4A3 11q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MS4A3   7317
Cards
Entrez_Gene (NCBI)MS4A3  932  membrane spanning 4-domains A3
AliasesCD20L; HTM4
GeneCards (Weizmann)MS4A3
Ensembl hg19 (Hinxton)ENSG00000149516 [Gene_View]  chr11:59824101-59838588 [Contig_View]  MS4A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149516 [Gene_View]  chr11:59824101-59838588 [Contig_View]  MS4A3 [Vega]
ICGC DataPortalENSG00000149516
TCGA cBioPortalMS4A3
AceView (NCBI)MS4A3
Genatlas (Paris)MS4A3
WikiGenes932
SOURCE (Princeton)MS4A3
Genetics Home Reference (NIH)MS4A3
Genomic and cartography
GoldenPath hg19 (UCSC)MS4A3  -     chr11:59824101-59838588 +  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MS4A3  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblMS4A3 - 11q12.1 [CytoView hg19]  MS4A3 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIMS4A3 [Mapview hg19]  MS4A3 [Mapview hg38]
OMIM606498   
Gene and transcription
Genbank (Entrez)AL601630 AY095480 BC008487 BE564041 BF210971
RefSeq transcript (Entrez)NM_001031666 NM_001031809 NM_006138
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)MS4A3
Cluster EST : UnigeneHs.99960 [ NCBI ]
CGAP (NCI)Hs.99960
Alternative Splicing GalleryENSG00000149516
Gene ExpressionMS4A3 [ NCBI-GEO ]   MS4A3 [ EBI - ARRAY_EXPRESS ]   MS4A3 [ SEEK ]   MS4A3 [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)932
GTEX Portal (Tissue expression)MS4A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HJ5
Splice isoforms : SwissVarQ96HJ5
PhosPhoSitePlusQ96HJ5
Domains : Interpro (EBI)CD20-like    MS4A    MS4A3   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A3
DMDM Disease mutations932
Blocks (Seattle)MS4A3
SuperfamilyQ96HJ5
Human Protein AtlasENSG00000149516
Peptide AtlasQ96HJ5
HPRD09403
IPIIPI00220897   IPI00220913   IPI00642885   IPI00978662   
Protein Interaction databases
DIP (DOE-UCLA)Q96HJ5
IntAct (EBI)Q96HJ5
FunCoupENSG00000149516
BioGRIDMS4A3
STRING (EMBL)MS4A3
ZODIACMS4A3
Ontologies - Pathways
QuickGOQ96HJ5
Ontology : AmiGOprotein binding  endomembrane system  integral component of membrane  perinuclear region of cytoplasm  regulation of cell cycle  
Ontology : EGO-EBIprotein binding  endomembrane system  integral component of membrane  perinuclear region of cytoplasm  regulation of cell cycle  
NDEx NetworkMS4A3
Atlas of Cancer Signalling NetworkMS4A3
Wikipedia pathwaysMS4A3
Orthology - Evolution
OrthoDB932
GeneTree (enSembl)ENSG00000149516
Phylogenetic Trees/Animal Genes : TreeFamMS4A3
HOVERGENQ96HJ5
HOGENOMQ96HJ5
Homologs : HomoloGeneMS4A3
Homology/Alignments : Family Browser (UCSC)MS4A3
Gene fusions - Rearrangements
Fusion : MitelmanARNT2/MS4A3 [15q25.1/11q12.1]  [t(11;15)(q12;q25)]  
Fusion: TCGAARNT2 15q25.1 MS4A3 11q12.1 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A3
dbVarMS4A3
ClinVarMS4A3
1000_GenomesMS4A3 
Exome Variant ServerMS4A3
ExAC (Exome Aggregation Consortium)MS4A3 (select the gene name)
Genetic variants : HAPMAP932
Genomic Variants (DGV)MS4A3 [DGVbeta]
DECIPHER (Syndromes)11:59824101-59838588  ENSG00000149516
CONAN: Copy Number AnalysisMS4A3 
Mutations
ICGC Data PortalMS4A3 
TCGA Data PortalMS4A3 
Broad Tumor PortalMS4A3
OASIS PortalMS4A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A3
DgiDB (Drug Gene Interaction Database)MS4A3
DoCM (Curated mutations)MS4A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A3 (select a term)
intoGenMS4A3
Cancer3DMS4A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606498   
Orphanet
MedgenMS4A3
Genetic Testing Registry MS4A3
NextProtQ96HJ5 [Medical]
TSGene932
GENETestsMS4A3
Huge Navigator MS4A3 [HugePedia]
snp3D : Map Gene to Disease932
BioCentury BCIQMS4A3
ClinGenMS4A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD932
Chemical/Pharm GKB GenePA31112
Clinical trialMS4A3
Miscellaneous
canSAR (ICR)MS4A3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A3
EVEXMS4A3
GoPubMedMS4A3
iHOPMS4A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:06 CEST 2017

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