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MS4A4E (membrane-spanning 4-domains, subfamily A, member 4E)

Identity

Alias_namesmembrane-spanning 4-domains, subfamily A, member 4E
Other alias-
HGNC (Hugo) MS4A4E
LocusID (NCBI) 643680
Atlas_Id 70506
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 59980568 and ends at 59997523 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)MS4A4E   14284
Cards
Entrez_Gene (NCBI)MS4A4E  643680  membrane-spanning 4-domains, subfamily A, member 4E
Aliases
GeneCards (Weizmann)MS4A4E
Ensembl hg19 (Hinxton) [Gene_View]  chr11:59980568-59997523 [Contig_View]  MS4A4E [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:59980568-59997523 [Contig_View]  MS4A4E [Vega]
TCGA cBioPortalMS4A4E
AceView (NCBI)MS4A4E
Genatlas (Paris)MS4A4E
WikiGenes643680
SOURCE (Princeton)MS4A4E
Genetics Home Reference (NIH)MS4A4E
Genomic and cartography
GoldenPath hg19 (UCSC)MS4A4E  -     chr11:59980568-59997523 -  11q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MS4A4E  -     11q12.2   [Description]    (hg38-Dec_2013)
EnsemblMS4A4E - 11q12.2 [CytoView hg19]  MS4A4E - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A4E [Mapview hg19]  MS4A4E [Mapview hg38]
OMIM608401   
Gene and transcription
Genbank (Entrez)AB231725 AB231726 AB231727 AB231728 AB231729
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)MS4A4E
Cluster EST : UnigeneHs.559934 [ NCBI ]
CGAP (NCI)Hs.559934
Gene ExpressionMS4A4E [ NCBI-GEO ]   MS4A4E [ EBI - ARRAY_EXPRESS ]   MS4A4E [ SEEK ]   MS4A4E [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A4E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643680
GTEX Portal (Tissue expression)MS4A4E
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PG1
Splice isoforms : SwissVarQ96PG1
PhosPhoSitePlusQ96PG1
Domains : Interpro (EBI)CD20-like    MS4A    MS4A4A   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A4E
DMDM Disease mutations643680
Blocks (Seattle)MS4A4E
SuperfamilyQ96PG1
Peptide AtlasQ96PG1
IPIIPI00736465   IPI00894208   IPI00655729   IPI00942799   IPI00981636   IPI00985209   
Protein Interaction databases
DIP (DOE-UCLA)Q96PG1
IntAct (EBI)Q96PG1
BioGRIDMS4A4E
STRING (EMBL)MS4A4E
ZODIACMS4A4E
Ontologies - Pathways
QuickGOQ96PG1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMS4A4E
Atlas of Cancer Signalling NetworkMS4A4E
Wikipedia pathwaysMS4A4E
Orthology - Evolution
OrthoDB643680
Phylogenetic Trees/Animal Genes : TreeFamMS4A4E
HOVERGENQ96PG1
HOGENOMQ96PG1
Homologs : HomoloGeneMS4A4E
Homology/Alignments : Family Browser (UCSC)MS4A4E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A4E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A4E
dbVarMS4A4E
ClinVarMS4A4E
1000_GenomesMS4A4E 
Exome Variant ServerMS4A4E
ExAC (Exome Aggregation Consortium)MS4A4E (select the gene name)
Genetic variants : HAPMAP643680
Genomic Variants (DGV)MS4A4E [DGVbeta]
DECIPHER (Syndromes)11:59980568-59997523  
CONAN: Copy Number AnalysisMS4A4E 
Mutations
ICGC Data PortalMS4A4E 
TCGA Data PortalMS4A4E 
Broad Tumor PortalMS4A4E
OASIS PortalMS4A4E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A4E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A4E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A4E
DgiDB (Drug Gene Interaction Database)MS4A4E
DoCM (Curated mutations)MS4A4E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A4E (select a term)
intoGenMS4A4E
Cancer3DMS4A4E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608401   
Orphanet
MedgenMS4A4E
Genetic Testing Registry MS4A4E
NextProtQ96PG1 [Medical]
TSGene643680
GENETestsMS4A4E
Huge Navigator MS4A4E [HugePedia]
snp3D : Map Gene to Disease643680
BioCentury BCIQMS4A4E
ClinGenMS4A4E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643680
Chemical/Pharm GKB GenePA31117
Clinical trialMS4A4E
Miscellaneous
canSAR (ICR)MS4A4E (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A4E
EVEXMS4A4E
GoPubMedMS4A4E
iHOPMS4A4E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:33:54 CET 2017

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