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MS4A5 (membrane spanning 4-domains A5)

Identity

Alias_namesmembrane-spanning 4-domains, subfamily A, member 5
Alias_symbol (synonym)CD20L2
Other aliasCD20-L2
TETM4
HGNC (Hugo) MS4A5
LocusID (NCBI) 64232
Atlas_Id 70507
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60429589 and ends at 60447792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM111B (11q12.1) / MS4A5 (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MS4A5   13374
Cards
Entrez_Gene (NCBI)MS4A5  64232  membrane spanning 4-domains A5
AliasesCD20-L2; CD20L2; TETM4
GeneCards (Weizmann)MS4A5
Ensembl hg19 (Hinxton)ENSG00000166930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166930 [Gene_View]  chr11:60429589-60447792 [Contig_View]  MS4A5 [Vega]
ICGC DataPortalENSG00000166930
TCGA cBioPortalMS4A5
AceView (NCBI)MS4A5
Genatlas (Paris)MS4A5
WikiGenes64232
SOURCE (Princeton)MS4A5
Genetics Home Reference (NIH)MS4A5
Genomic and cartography
GoldenPath hg38 (UCSC)MS4A5  -     chr11:60429589-60447792 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MS4A5  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblMS4A5 - 11q12.2 [CytoView hg19]  MS4A5 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A5 [Mapview hg19]  MS4A5 [Mapview hg38]
OMIM606499   
Gene and transcription
Genbank (Entrez)AB013103 AF237907 AF321127 BC029884
RefSeq transcript (Entrez)NM_023945
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MS4A5
Cluster EST : UnigeneHs.178066 [ NCBI ]
CGAP (NCI)Hs.178066
Alternative Splicing GalleryENSG00000166930
Gene ExpressionMS4A5 [ NCBI-GEO ]   MS4A5 [ EBI - ARRAY_EXPRESS ]   MS4A5 [ SEEK ]   MS4A5 [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64232
GTEX Portal (Tissue expression)MS4A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3V2
Splice isoforms : SwissVarQ9H3V2
PhosPhoSitePlusQ9H3V2
Domains : Interpro (EBI)CD20-like    MS4A    MS4A5   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A5
DMDM Disease mutations64232
Blocks (Seattle)MS4A5
SuperfamilyQ9H3V2
Human Protein AtlasENSG00000166930
Peptide AtlasQ9H3V2
HPRD07578
IPIIPI00171488   IPI00980640   IPI00982427   IPI00984290   IPI00983608   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3V2
IntAct (EBI)Q9H3V2
FunCoupENSG00000166930
BioGRIDMS4A5
STRING (EMBL)MS4A5
ZODIACMS4A5
Ontologies - Pathways
QuickGOQ9H3V2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMS4A5
Atlas of Cancer Signalling NetworkMS4A5
Wikipedia pathwaysMS4A5
Orthology - Evolution
OrthoDB64232
GeneTree (enSembl)ENSG00000166930
Phylogenetic Trees/Animal Genes : TreeFamMS4A5
HOVERGENQ9H3V2
HOGENOMQ9H3V2
Homologs : HomoloGeneMS4A5
Homology/Alignments : Family Browser (UCSC)MS4A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A5
dbVarMS4A5
ClinVarMS4A5
1000_GenomesMS4A5 
Exome Variant ServerMS4A5
ExAC (Exome Aggregation Consortium)MS4A5 (select the gene name)
Genetic variants : HAPMAP64232
Genomic Variants (DGV)MS4A5 [DGVbeta]
DECIPHERMS4A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMS4A5 
Mutations
ICGC Data PortalMS4A5 
TCGA Data PortalMS4A5 
Broad Tumor PortalMS4A5
OASIS PortalMS4A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A5
DgiDB (Drug Gene Interaction Database)MS4A5
DoCM (Curated mutations)MS4A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A5 (select a term)
intoGenMS4A5
Cancer3DMS4A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606499   
Orphanet
MedgenMS4A5
Genetic Testing Registry MS4A5
NextProtQ9H3V2 [Medical]
TSGene64232
GENETestsMS4A5
Target ValidationMS4A5
Huge Navigator MS4A5 [HugePedia]
snp3D : Map Gene to Disease64232
BioCentury BCIQMS4A5
ClinGenMS4A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64232
Chemical/Pharm GKB GenePA31118
Clinical trialMS4A5
Miscellaneous
canSAR (ICR)MS4A5 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A5
EVEXMS4A5
GoPubMedMS4A5
iHOPMS4A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:20 CEST 2017

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