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MS4A6E (membrane spanning 4-domains A6E)

Identity

Alias_namesmembrane-spanning 4-domains, subfamily A, member 6E
Other alias-
HGNC (Hugo) MS4A6E
LocusID (NCBI) 245802
Atlas_Id 70509
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60334882 and ends at 60340968 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MS4A6E   14285
Cards
Entrez_Gene (NCBI)MS4A6E  245802  membrane spanning 4-domains A6E
Aliases
GeneCards (Weizmann)MS4A6E
Ensembl hg19 (Hinxton)ENSG00000166926 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166926 [Gene_View]  chr11:60334882-60340968 [Contig_View]  MS4A6E [Vega]
ICGC DataPortalENSG00000166926
TCGA cBioPortalMS4A6E
AceView (NCBI)MS4A6E
Genatlas (Paris)MS4A6E
WikiGenes245802
SOURCE (Princeton)MS4A6E
Genetics Home Reference (NIH)MS4A6E
Genomic and cartography
GoldenPath hg38 (UCSC)MS4A6E  -     chr11:60334882-60340968 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MS4A6E  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblMS4A6E - 11q12.2 [CytoView hg19]  MS4A6E - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A6E [Mapview hg19]  MS4A6E [Mapview hg38]
OMIM608402   
Gene and transcription
Genbank (Entrez)AF333758 AF354931 AF354932 AF354933 BC034588
RefSeq transcript (Entrez)NM_139249
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MS4A6E
Cluster EST : UnigeneHs.662211 [ NCBI ]
CGAP (NCI)Hs.662211
Alternative Splicing GalleryENSG00000166926
Gene ExpressionMS4A6E [ NCBI-GEO ]   MS4A6E [ EBI - ARRAY_EXPRESS ]   MS4A6E [ SEEK ]   MS4A6E [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A6E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)245802
GTEX Portal (Tissue expression)MS4A6E
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DS6
Splice isoforms : SwissVarQ96DS6
PhosPhoSitePlusQ96DS6
Domains : Interpro (EBI)CD20-like    MS4A    MS4A6A/MS4A6E   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A6E
DMDM Disease mutations245802
Blocks (Seattle)MS4A6E
SuperfamilyQ96DS6
Human Protein AtlasENSG00000166926
Peptide AtlasQ96DS6
HPRD12227
IPIIPI00061147   IPI00980910   IPI00982629   
Protein Interaction databases
DIP (DOE-UCLA)Q96DS6
IntAct (EBI)Q96DS6
FunCoupENSG00000166926
BioGRIDMS4A6E
STRING (EMBL)MS4A6E
ZODIACMS4A6E
Ontologies - Pathways
QuickGOQ96DS6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMS4A6E
Atlas of Cancer Signalling NetworkMS4A6E
Wikipedia pathwaysMS4A6E
Orthology - Evolution
OrthoDB245802
GeneTree (enSembl)ENSG00000166926
Phylogenetic Trees/Animal Genes : TreeFamMS4A6E
HOVERGENQ96DS6
HOGENOMQ96DS6
Homologs : HomoloGeneMS4A6E
Homology/Alignments : Family Browser (UCSC)MS4A6E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A6E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A6E
dbVarMS4A6E
ClinVarMS4A6E
1000_GenomesMS4A6E 
Exome Variant ServerMS4A6E
ExAC (Exome Aggregation Consortium)MS4A6E (select the gene name)
Genetic variants : HAPMAP245802
Genomic Variants (DGV)MS4A6E [DGVbeta]
DECIPHERMS4A6E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMS4A6E 
Mutations
ICGC Data PortalMS4A6E 
TCGA Data PortalMS4A6E 
Broad Tumor PortalMS4A6E
OASIS PortalMS4A6E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A6E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A6E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A6E
DgiDB (Drug Gene Interaction Database)MS4A6E
DoCM (Curated mutations)MS4A6E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A6E (select a term)
intoGenMS4A6E
Cancer3DMS4A6E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608402   
Orphanet
MedgenMS4A6E
Genetic Testing Registry MS4A6E
NextProtQ96DS6 [Medical]
TSGene245802
GENETestsMS4A6E
Target ValidationMS4A6E
Huge Navigator MS4A6E [HugePedia]
snp3D : Map Gene to Disease245802
BioCentury BCIQMS4A6E
ClinGenMS4A6E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245802
Chemical/Pharm GKB GenePA31123
Clinical trialMS4A6E
Miscellaneous
canSAR (ICR)MS4A6E (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A6E
EVEXMS4A6E
GoPubMedMS4A6E
iHOPMS4A6E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:41 CEST 2017

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