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MS4A7 (membrane spanning 4-domains A7)

Identity

Alias_namesmembrane-spanning 4-domains, subfamily A, member 7
Alias_symbol (synonym)CD20L4
CFFM4
MS4A8
Other alias4SPAN2
HGNC (Hugo) MS4A7
LocusID (NCBI) 58475
Atlas_Id 70510
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60378485 and ends at 60395953 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LYZ (12q15) / MS4A7 (11q12.2)MS4A7 (11q12.2) / ATG2A (11q13.1)MS4A7 (11q12.2) / C2CD3 (11q13.4)
MS4A7 (11q12.2) / PIK3R5 (17p13.1)RBP7 (1p36.22) / MS4A7 (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MS4A7   13378
Cards
Entrez_Gene (NCBI)MS4A7  58475  membrane spanning 4-domains A7
Aliases4SPAN2; CD20L4; CFFM4; MS4A8
GeneCards (Weizmann)MS4A7
Ensembl hg19 (Hinxton)ENSG00000166927 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166927 [Gene_View]  chr11:60378485-60395953 [Contig_View]  MS4A7 [Vega]
ICGC DataPortalENSG00000166927
TCGA cBioPortalMS4A7
AceView (NCBI)MS4A7
Genatlas (Paris)MS4A7
WikiGenes58475
SOURCE (Princeton)MS4A7
Genetics Home Reference (NIH)MS4A7
Genomic and cartography
GoldenPath hg38 (UCSC)MS4A7  -     chr11:60378485-60395953 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MS4A7  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblMS4A7 - 11q12.2 [CytoView hg19]  MS4A7 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBIMS4A7 [Mapview hg19]  MS4A7 [Mapview hg38]
OMIM606502   
Gene and transcription
Genbank (Entrez)AB026043 AF201951 AF237916 AF309653 AF350501
RefSeq transcript (Entrez)NM_021201 NM_206938 NM_206939 NM_206940
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MS4A7
Cluster EST : UnigeneHs.530735 [ NCBI ]
CGAP (NCI)Hs.530735
Alternative Splicing GalleryENSG00000166927
Gene ExpressionMS4A7 [ NCBI-GEO ]   MS4A7 [ EBI - ARRAY_EXPRESS ]   MS4A7 [ SEEK ]   MS4A7 [ MEM ]
Gene Expression Viewer (FireBrowse)MS4A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58475
GTEX Portal (Tissue expression)MS4A7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZW8
Splice isoforms : SwissVarQ9GZW8
PhosPhoSitePlusQ9GZW8
Domains : Interpro (EBI)CD20-like    MS4A    MS4A7   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)MS4A7
DMDM Disease mutations58475
Blocks (Seattle)MS4A7
SuperfamilyQ9GZW8
Human Protein AtlasENSG00000166927
Peptide AtlasQ9GZW8
HPRD07579
IPIIPI00009636   IPI00410151   IPI00976122   IPI00977227   IPI00979427   IPI00980018   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZW8
IntAct (EBI)Q9GZW8
FunCoupENSG00000166927
BioGRIDMS4A7
STRING (EMBL)MS4A7
ZODIACMS4A7
Ontologies - Pathways
QuickGOQ9GZW8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMS4A7
Atlas of Cancer Signalling NetworkMS4A7
Wikipedia pathwaysMS4A7
Orthology - Evolution
OrthoDB58475
GeneTree (enSembl)ENSG00000166927
Phylogenetic Trees/Animal Genes : TreeFamMS4A7
HOVERGENQ9GZW8
HOGENOMQ9GZW8
Homologs : HomoloGeneMS4A7
Homology/Alignments : Family Browser (UCSC)MS4A7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMS4A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MS4A7
dbVarMS4A7
ClinVarMS4A7
1000_GenomesMS4A7 
Exome Variant ServerMS4A7
ExAC (Exome Aggregation Consortium)MS4A7 (select the gene name)
Genetic variants : HAPMAP58475
Genomic Variants (DGV)MS4A7 [DGVbeta]
DECIPHERMS4A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMS4A7 
Mutations
ICGC Data PortalMS4A7 
TCGA Data PortalMS4A7 
Broad Tumor PortalMS4A7
OASIS PortalMS4A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMS4A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMS4A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MS4A7
DgiDB (Drug Gene Interaction Database)MS4A7
DoCM (Curated mutations)MS4A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MS4A7 (select a term)
intoGenMS4A7
Cancer3DMS4A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606502   
Orphanet
MedgenMS4A7
Genetic Testing Registry MS4A7
NextProtQ9GZW8 [Medical]
TSGene58475
GENETestsMS4A7
Target ValidationMS4A7
Huge Navigator MS4A7 [HugePedia]
snp3D : Map Gene to Disease58475
BioCentury BCIQMS4A7
ClinGenMS4A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58475
Chemical/Pharm GKB GenePA31124
Clinical trialMS4A7
Miscellaneous
canSAR (ICR)MS4A7 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMS4A7
EVEXMS4A7
GoPubMedMS4A7
iHOPMS4A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:41 CEST 2017

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