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MSANTD1 (Myb/SANT DNA binding domain containing 1)

Identity

Alias_namesC4orf44
chromosome 4 open reading frame 44
Myb/SANT-like DNA-binding domain containing 1
Alias_symbol (synonym)LOC345222
Other alias
HGNC (Hugo) MSANTD1
LocusID (NCBI) 345222
Atlas_Id 70512
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 3249040 and ends at 3256615 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSANTD1   33741
Cards
Entrez_Gene (NCBI)MSANTD1  345222  Myb/SANT DNA binding domain containing 1
AliasesC4orf44
GeneCards (Weizmann)MSANTD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:3249040-3256615 [Contig_View]  MSANTD1 [Vega]
TCGA cBioPortalMSANTD1
AceView (NCBI)MSANTD1
Genatlas (Paris)MSANTD1
WikiGenes345222
SOURCE (Princeton)MSANTD1
Genetics Home Reference (NIH)MSANTD1
Genomic and cartography
GoldenPath hg38 (UCSC)MSANTD1  -     chr4:3249040-3256615 +  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSANTD1  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblMSANTD1 - 4p16.3 [CytoView hg19]  MSANTD1 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIMSANTD1 [Mapview hg19]  MSANTD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126094 BC043530 BQ185297 BQ631148
RefSeq transcript (Entrez)NM_001012982 NM_001042690 NM_001330620
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSANTD1
Cluster EST : UnigeneHs.442291 [ NCBI ]
CGAP (NCI)Hs.442291
Gene ExpressionMSANTD1 [ NCBI-GEO ]   MSANTD1 [ EBI - ARRAY_EXPRESS ]   MSANTD1 [ SEEK ]   MSANTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)MSANTD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)345222
GTEX Portal (Tissue expression)MSANTD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTZ1
Splice isoforms : SwissVarQ6ZTZ1
PhosPhoSitePlusQ6ZTZ1
Domains : Interpro (EBI)Myb/SANT-like_DNA-bd_dom_prot   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MSANTD1
DMDM Disease mutations345222
Blocks (Seattle)MSANTD1
SuperfamilyQ6ZTZ1
Peptide AtlasQ6ZTZ1
HPRD16084
IPIIPI00419012   IPI00917858   IPI00955031   IPI00967346   IPI00967576   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTZ1
IntAct (EBI)Q6ZTZ1
BioGRIDMSANTD1
STRING (EMBL)MSANTD1
ZODIACMSANTD1
Ontologies - Pathways
QuickGOQ6ZTZ1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMSANTD1
Atlas of Cancer Signalling NetworkMSANTD1
Wikipedia pathwaysMSANTD1
Orthology - Evolution
OrthoDB345222
Phylogenetic Trees/Animal Genes : TreeFamMSANTD1
HOVERGENQ6ZTZ1
HOGENOMQ6ZTZ1
Homologs : HomoloGeneMSANTD1
Homology/Alignments : Family Browser (UCSC)MSANTD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSANTD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSANTD1
dbVarMSANTD1
ClinVarMSANTD1
1000_GenomesMSANTD1 
Exome Variant ServerMSANTD1
ExAC (Exome Aggregation Consortium)MSANTD1 (select the gene name)
Genetic variants : HAPMAP345222
Genomic Variants (DGV)MSANTD1 [DGVbeta]
DECIPHERMSANTD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSANTD1 
Mutations
ICGC Data PortalMSANTD1 
TCGA Data PortalMSANTD1 
Broad Tumor PortalMSANTD1
OASIS PortalMSANTD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSANTD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMSANTD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MSANTD1
DgiDB (Drug Gene Interaction Database)MSANTD1
DoCM (Curated mutations)MSANTD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSANTD1 (select a term)
intoGenMSANTD1
Cancer3DMSANTD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMSANTD1
Genetic Testing Registry MSANTD1
NextProtQ6ZTZ1 [Medical]
TSGene345222
GENETestsMSANTD1
Target ValidationMSANTD1
Huge Navigator MSANTD1 [HugePedia]
snp3D : Map Gene to Disease345222
BioCentury BCIQMSANTD1
ClinGenMSANTD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD345222
Chemical/Pharm GKB GenePA162379942
Clinical trialMSANTD1
Miscellaneous
canSAR (ICR)MSANTD1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSANTD1
EVEXMSANTD1
GoPubMedMSANTD1
iHOPMSANTD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:42 CEST 2017

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