Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MSANTD2 (Myb/SANT DNA binding domain containing 2)

Identity

Alias_namesC11orf61
chromosome 11 open reading frame 61
Myb/SANT-like DNA-binding domain containing 2
Alias_symbol (synonym)FLJ23342
Other alias
HGNC (Hugo) MSANTD2
LocusID (NCBI) 79684
Atlas_Id 70513
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124766498 and ends at 124800404 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MSANTD2   26266
Cards
Entrez_Gene (NCBI)MSANTD2  79684  Myb/SANT DNA binding domain containing 2
AliasesC11orf61
GeneCards (Weizmann)MSANTD2
Ensembl hg19 (Hinxton)ENSG00000120458 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120458 [Gene_View]  chr11:124766498-124800404 [Contig_View]  MSANTD2 [Vega]
ICGC DataPortalENSG00000120458
TCGA cBioPortalMSANTD2
AceView (NCBI)MSANTD2
Genatlas (Paris)MSANTD2
WikiGenes79684
SOURCE (Princeton)MSANTD2
Genetics Home Reference (NIH)MSANTD2
Genomic and cartography
GoldenPath hg38 (UCSC)MSANTD2  -     chr11:124766498-124800404 -  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSANTD2  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblMSANTD2 - 11q24.2 [CytoView hg19]  MSANTD2 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIMSANTD2 [Mapview hg19]  MSANTD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA767162 AK026995 AK092413 AK303902 AL512691
RefSeq transcript (Entrez)NM_001301087 NM_001308027 NM_001312919 NM_001312920 NM_001312921 NM_024631
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSANTD2
Cluster EST : UnigeneHs.146079 [ NCBI ]
CGAP (NCI)Hs.146079
Alternative Splicing GalleryENSG00000120458
Gene ExpressionMSANTD2 [ NCBI-GEO ]   MSANTD2 [ EBI - ARRAY_EXPRESS ]   MSANTD2 [ SEEK ]   MSANTD2 [ MEM ]
Gene Expression Viewer (FireBrowse)MSANTD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79684
GTEX Portal (Tissue expression)MSANTD2
Human Protein AtlasENSG00000120458-MSANTD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1R3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1R3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1R3
Splice isoforms : SwissVarQ6P1R3
PhosPhoSitePlusQ6P1R3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MSANTD2
DMDM Disease mutations79684
Blocks (Seattle)MSANTD2
SuperfamilyQ6P1R3
Human Protein Atlas [tissue]ENSG00000120458-MSANTD2 [tissue]
Peptide AtlasQ6P1R3
HPRD08024
IPIIPI00439946   IPI00827483   IPI00748878   IPI00982858   IPI00980900   
Protein Interaction databases
DIP (DOE-UCLA)Q6P1R3
IntAct (EBI)Q6P1R3
FunCoupENSG00000120458
BioGRIDMSANTD2
STRING (EMBL)MSANTD2
ZODIACMSANTD2
Ontologies - Pathways
QuickGOQ6P1R3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMSANTD2
Atlas of Cancer Signalling NetworkMSANTD2
Wikipedia pathwaysMSANTD2
Orthology - Evolution
OrthoDB79684
GeneTree (enSembl)ENSG00000120458
Phylogenetic Trees/Animal Genes : TreeFamMSANTD2
HOVERGENQ6P1R3
HOGENOMQ6P1R3
Homologs : HomoloGeneMSANTD2
Homology/Alignments : Family Browser (UCSC)MSANTD2
Gene fusions - Rearrangements
Fusion : QuiverMSANTD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSANTD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSANTD2
dbVarMSANTD2
ClinVarMSANTD2
1000_GenomesMSANTD2 
Exome Variant ServerMSANTD2
ExAC (Exome Aggregation Consortium)ENSG00000120458
GNOMAD BrowserENSG00000120458
Genetic variants : HAPMAP79684
Genomic Variants (DGV)MSANTD2 [DGVbeta]
DECIPHERMSANTD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSANTD2 
Mutations
ICGC Data PortalMSANTD2 
TCGA Data PortalMSANTD2 
Broad Tumor PortalMSANTD2
OASIS PortalMSANTD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSANTD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMSANTD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MSANTD2
DgiDB (Drug Gene Interaction Database)MSANTD2
DoCM (Curated mutations)MSANTD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSANTD2 (select a term)
intoGenMSANTD2
Cancer3DMSANTD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMSANTD2
MedgenMSANTD2
Genetic Testing Registry MSANTD2
NextProtQ6P1R3 [Medical]
TSGene79684
GENETestsMSANTD2
Target ValidationMSANTD2
Huge Navigator MSANTD2 [HugePedia]
snp3D : Map Gene to Disease79684
BioCentury BCIQMSANTD2
ClinGenMSANTD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79684
Chemical/Pharm GKB GenePA143485356
Clinical trialMSANTD2
Miscellaneous
canSAR (ICR)MSANTD2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSANTD2
EVEXMSANTD2
GoPubMedMSANTD2
iHOPMSANTD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:43:49 CET 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.